Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0057
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    28   1.4  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    27   3.3  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    26   4.4  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    26   4.4  
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    25   7.6  
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc...    25   7.6  

>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 508 ICVMTTQQEGPCMSAVGGRARPGETRRVHPSDTLVP 401
           +C  + +   PC   VG   RP E  + +PS   VP
Sbjct: 52  LCNDSHEALSPCTQPVGNSGRPVEAFKTYPSTPAVP 87


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 348 STRTSVLPRSPAAFSVLGHQTGRATSESHQSFGYGA 241
           STR ++       F + G  TG  T  +  SFGY A
Sbjct: 30  STRMTLAKVEGTEFGIFGTCTGNGTDCTETSFGYNA 65


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 297 GHQTGRATSESHQSFGYGA 241
           G Q G   SESH+SFG  A
Sbjct: 5   GAQNGNINSESHESFGKAA 23


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -1

Query: 554 KNDFFRKE*HCVIAINLRNDYPTGGPLYECSGRAGSTRRDAPSPPLRHT 408
           KNDF R   H V+  N + +  +   +YE +       +D PS P  H+
Sbjct: 49  KNDFERTMRHDVLHTNPKIEVRSETHIYEPNDSLFKENQDFPSNPTAHS 97


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = -1

Query: 344 PGRRCCHAHQPRSACWVTRLGGQHLSPTSRLDTELTVAPASSSKSLAGVLPNDAEVL 174
           PG + C+    ++  W+ +LG + L+P   ++T+L  AP +   +L     + AE L
Sbjct: 197 PGDKFCY-QAIQADKWIKKLGARRLAPLGVVNTQL--APTAQIDALLQWTRSVAECL 250


>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 413 VGGVDSARLSWSSPPSHCTH 472
           +GG+D A   W    +HC+H
Sbjct: 194 IGGIDGAIKIWDLRNNHCSH 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,426
Number of Sequences: 5004
Number of extensions: 55589
Number of successful extensions: 151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)