Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0057
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0039 + 302332-302471,302981-303509,304345-304389,304572-30...    31   1.1  
03_05_0702 - 26934736-26935551,26937494-26937538,26938484-26938594     30   2.0  
04_04_1374 - 33028790-33028951,33029033-33029087,33029402-330294...    29   2.6  
01_01_0849 - 6623963-6624519,6627371-6628173,6628390-6628901           29   2.6  
12_01_0369 + 2829094-2830986                                           28   6.0  
09_04_0256 + 16148820-16148998,16149547-16150241,16150317-161505...    28   7.9  
05_01_0595 + 5344721-5345249,5349183-5349264,5349813-5350507,535...    28   7.9  
03_06_0137 - 31937541-31939892                                         28   7.9  

>01_01_0039 +
           302332-302471,302981-303509,304345-304389,304572-304718,
           304834-304899,304993-305058,305171-305257
          Length = 359

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/41 (34%), Positives = 27/41 (65%)
 Frame = +3

Query: 450 ARPPTALIQGPSCWVVITQIYCDYTMLFFPKEVILEQKFSA 572
           A PP  LIQGPS  + + ++ C   ++F P++V++++  +A
Sbjct: 208 AGPPAHLIQGPSNTLQLLRVTC---VIFLPQKVLMKRNTNA 245


>03_05_0702 - 26934736-26935551,26937494-26937538,26938484-26938594
          Length = 323

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -1

Query: 503 RNDYPTGGPLYECSGRAGSTRRDAPSP 423
           R D P  G  +EC GRAG   RD P+P
Sbjct: 122 RGDGPPPGNCFEC-GRAGHWARDCPNP 147


>04_04_1374 -
           33028790-33028951,33029033-33029087,33029402-33029466,
           33029558-33029701,33029825-33029878,33029971-33030220,
           33030340-33030446,33031206-33031216,33032682-33032796,
           33032897-33033005,33033088-33033203,33033288-33033647
          Length = 515

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
 Frame = +3

Query: 252 QTTGGTQMLPSQSGDPTR*TRLVSVAAPTS--GCCSITRSRGPRSQ--GGNVH-SGTSVS 416
           +T+G +  L  +SGDP   T   SV AP    G  S + +R P+     G +H   +S S
Sbjct: 27  ETSGTSHPLSPRSGDPLPTTTSASVTAPLELPGATSASPARNPKINYTRGILHLYRSSSS 86

Query: 417 EGWTRRVSPGRARPPTALIQGPS 485
              T   +   A  P++   GP+
Sbjct: 87  SSSTASYASAVAATPSSSSSGPA 109


>01_01_0849 - 6623963-6624519,6627371-6628173,6628390-6628901
          Length = 623

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +3

Query: 279 PSQSGDPTR*TRLVSVAAPTSGCCSITRSRGPRSQGGNVHSGTSVSEGWTR 431
           P  +  P     L SV+ P + CCS+T        GG+  +  + S G T+
Sbjct: 92  PVLTAKPATSISLRSVSPPAAACCSLTSIENVADHGGDHLTAGACSSGTTQ 142


>12_01_0369 + 2829094-2830986
          Length = 630

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 419 GVDSARLSWSSPPSHCTHTGALLLGSHYANLL 514
           G+    +++ S  S C+HTG +  G HY NLL
Sbjct: 354 GIFPNEVTYLSILSACSHTGLVEEGRHYFNLL 385


>09_04_0256 +
           16148820-16148998,16149547-16150241,16150317-16150573,
           16150668-16151349,16151423-16151626,16151715-16152449,
           16152533-16152698,16153253-16153400
          Length = 1021

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/58 (32%), Positives = 23/58 (39%)
 Frame = -1

Query: 440 RDAPSPPLRHTSA*VHITXXXXXXXXXXXXXAPGRRCCHAHQPRSACWVTRLGGQHLS 267
           R A S P R   A V ++              PG RC + H  R     TRL  QHL+
Sbjct: 47  RSAASAPARPVPARVEMSDSRDPVWEHGENIPPGWRCKYCHTKRGGGGATRL-KQHLA 103


>05_01_0595 +
           5344721-5345249,5349183-5349264,5349813-5350507,
           5350583-5350839,5350934-5351615,5351689-5351892,
           5351981-5352715,5352799-5353181
          Length = 1188

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/58 (32%), Positives = 23/58 (39%)
 Frame = -1

Query: 440 RDAPSPPLRHTSA*VHITXXXXXXXXXXXXXAPGRRCCHAHQPRSACWVTRLGGQHLS 267
           R A S P R   A V ++              PG RC + H  R     TRL  QHL+
Sbjct: 191 RSAASAPARPVPARVEMSDSRDPVWEHGENIPPGWRCKYCHTKRGGGGATRL-KQHLA 247


>03_06_0137 - 31937541-31939892
          Length = 783

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 419 GVDSARLSWSSPPSHCTHTGALLLGSHYANLLRLHNVILSERSH 550
           GV+  R+++    S C+H G +  G  Y + ++  + I  E SH
Sbjct: 507 GVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSH 550


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,061,469
Number of Sequences: 37544
Number of extensions: 454679
Number of successful extensions: 1472
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1471
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)