Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0057
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19160.3 68417.m02827 expressed protein                             29   2.1  
At4g19160.2 68417.m02826 expressed protein                             29   2.1  
At5g37550.1 68418.m04522 expressed protein                             29   2.8  
At3g55950.1 68416.m06217 protein kinase family protein contains ...    29   3.7  
At3g47840.1 68416.m05215 pentatricopeptide (PPR) repeat-containi...    28   4.9  
At5g63340.1 68418.m07950 expressed protein                             27   8.6  

>At4g19160.3 68417.m02827 expressed protein
          Length = 454

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 184 RRSCRWTSAELKSVFAKTECAAGTPYHLF 98
           RR C WT  E K  F + + A+ + Y LF
Sbjct: 47  RRGCSWTGIEKKIPFPRKKTASASAYPLF 75


>At4g19160.2 68417.m02826 expressed protein
          Length = 453

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 184 RRSCRWTSAELKSVFAKTECAAGTPYHLF 98
           RR C WT  E K  F + + A+ + Y LF
Sbjct: 47  RRGCSWTGIEKKIPFPRKKTASASAYPLF 75


>At5g37550.1 68418.m04522 expressed protein 
          Length = 230

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 561 KFSANFIRILRDLKTTQPHRSHELRGPQ 644
           K  AN   IL + K ++PH +H LRG Q
Sbjct: 91  KLEANKTMILSENKVSKPHSNHFLRGDQ 118


>At3g55950.1 68416.m06217 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; similar to
           cytokinin-regulated kinase 1 [Nicotiana tabacum]
           gi|10998537|gb|AAG25966
          Length = 814

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 410 CVGGVDSARLSWSSPPSHCTHTGALLLGSHYANLLRLHN 526
           C+G  DS +L+  +P     ++ +L LGS++   +R+ N
Sbjct: 222 CIGNNDSGQLNVIAPDQPNLYSSSLSLGSNFTCAMRISN 260


>At3g47840.1 68416.m05215 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 706

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 464 CTHTGALLLGSHYANLLR 517
           CTH+G L LG HY N+++
Sbjct: 522 CTHSGQLDLGFHYFNMMQ 539


>At5g63340.1 68418.m07950 expressed protein
          Length = 172

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 537 PKEVILEQKFSANFIRILRDLKTTQPHRSHELRGPQPLVTS 659
           PK+ + +++ +   I  L    T    RS E+  P PL+ S
Sbjct: 61  PKKYLPQRQLAKKLIETLEKPSTESKKRSEEMSSPPPLIES 101


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,184,006
Number of Sequences: 28952
Number of extensions: 319780
Number of successful extensions: 900
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)