Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0054
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0401 + 9847398-9847463,9848916-9849019,9849873-9849876,984...    31   0.87 
03_05_0337 - 23272845-23273271,23273318-23273526,23275615-23276298     28   6.2  
11_02_0068 + 7991816-7992603,7995209-7997177                           28   8.1  
05_01_0479 - 3920992-3921513,3921643-3921756,3921905-3922482,392...    28   8.1  

>02_02_0401 +
           9847398-9847463,9848916-9849019,9849873-9849876,
           9849968-9851230
          Length = 478

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +3

Query: 360 PPFPSFIQGSYVCAREAGLDLVNLDHCVANVGDELD 467
           PP   F Q   VC+ E   D   L+  +ANV D LD
Sbjct: 421 PPLADFNQAKNVCSLETSSDPCTLEQHLANVSDLLD 456


>03_05_0337 - 23272845-23273271,23273318-23273526,23275615-23276298
          Length = 439

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 465 PTHHQHSQHNGPN*PDPSQPHARRRMSLV 379
           P HH H  H GP  P P+   + ++  L+
Sbjct: 109 PPHHHHHHHGGPLTPPPATSSSSQQAGLL 137


>11_02_0068 + 7991816-7992603,7995209-7997177
          Length = 918

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 488 SGCLSSGIQLITNIRNTMVQID 423
           +G    GIQ +TN+RN  +Q+D
Sbjct: 852 NGSFDFGIQYLTNLRNVYIQLD 873


>05_01_0479 -
           3920992-3921513,3921643-3921756,3921905-3922482,
           3922709-3923067,3923132-3923205
          Length = 548

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 436 WSKLTRSKPASRAQTYEPCIKDGKGGAYSHC 344
           WS+LT+S     AQ  +PC   G  G ++ C
Sbjct: 155 WSQLTQSLQKVYAQPVDPCTAFGTCGPFTIC 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,351,669
Number of Sequences: 37544
Number of extensions: 418475
Number of successful extensions: 1082
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)