Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0054
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16622-5|ABC71836.1|  263|Caenorhabditis elegans Hypothetical pr...    38   0.007
L16622-4|AAA27914.1|  323|Caenorhabditis elegans Hypothetical pr...    38   0.007
AF077534-7|AAK71376.1|  319|Caenorhabditis elegans Prion-like-(q...    38   0.009
Z81534-4|CAB04345.1|  277|Caenorhabditis elegans Hypothetical pr...    37   0.012
Z47811-1|CAA87785.3|  201|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AF003150-5|AAB54213.1|  474|Caenorhabditis elegans Hypothetical ...    28   7.3  

>L16622-5|ABC71836.1|  263|Caenorhabditis elegans Hypothetical
           protein C02D5.2b protein.
          Length = 263

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +1

Query: 79  QTVNGKIKISVGTTAGCSDTVNFISQQLKEAYDLYKEY--LEIEYVPWGRTR 228
           + V   +K+ V   A C DT  F  QQLK+A+D+      +E+  +P+G+ R
Sbjct: 73  EPVENIVKLDVYMEAQCPDTSRFFRQQLKKAWDILGRLNRIELNVIPFGKAR 124


>L16622-4|AAA27914.1|  323|Caenorhabditis elegans Hypothetical
           protein C02D5.2a protein.
          Length = 323

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +1

Query: 79  QTVNGKIKISVGTTAGCSDTVNFISQQLKEAYDLYKEY--LEIEYVPWGRTR 228
           + V   +K+ V   A C DT  F  QQLK+A+D+      +E+  +P+G+ R
Sbjct: 133 EPVENIVKLDVYMEAQCPDTSRFFRQQLKKAWDILGRLNRIELNVIPFGKAR 184


>AF077534-7|AAK71376.1|  319|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 48
           protein.
          Length = 319

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +1

Query: 97  IKISVGTTAGCSDTVNFISQQLKEAYDLYKEYLEIEYVPWGRTR-FDNGQFTCH 255
           IKI++   A C     FI+ QL   ++ ++  L +E VPWG +R   +G F+C+
Sbjct: 141 IKITLIYEALCPYCQKFIANQLGSVFNQFQGQLILELVPWGNSRIMRDGSFSCN 194


>Z81534-4|CAB04345.1|  277|Caenorhabditis elegans Hypothetical
           protein F37H8.5 protein.
          Length = 277

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +1

Query: 82  TVNGKIKISVGTTAGCSDTVNFISQQLKE-AYDLYKEYLEIEYVPWGRTR-FDNGQFTC 252
           T N KI I+V   A C D  NF+++QL    +  +  Y+ IE VP+G  +  ++G   C
Sbjct: 71  THNQKINITVLIEALCPDCQNFLTKQLYPIVFKNFANYVNIELVPFGNAKVLEDGTIKC 129


>Z47811-1|CAA87785.3|  201|Caenorhabditis elegans Hypothetical
           protein K02C4.2 protein.
          Length = 201

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 276 ANRLHRCALNMLRGNQDAQVRYMQCE-YAPPFPSFIQGSYVCARE 407
           A R   C    L   ++A  R ++C+ Y PP   F +  Y+CA E
Sbjct: 125 AARQGECVFECLYPGRNACTRKLKCDLYLPPEDEFFKTFYLCAEE 169


>AF003150-5|AAB54213.1|  474|Caenorhabditis elegans Hypothetical
           protein T05E7.1 protein.
          Length = 474

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = +1

Query: 73  ALQTVNGKIKISVGTTAGCSDTVNFISQQLKEAYDLYKEYLEIEYVPWGR 222
           A+   NGK   +     G SD VN + +Q     DLY        +PW R
Sbjct: 297 AVMKENGKPMETQILDEGMSDFVNQVLRQKPAFRDLYSNLTPTTSIPWAR 346


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,100,039
Number of Sequences: 27780
Number of extensions: 343410
Number of successful extensions: 1018
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)