Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0054
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    26   0.30 
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               24   1.2  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              23   2.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.5  

>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 552 IATTKLSGGCPV*FASLYLTTRTMILLVVKFRSPMLIGFIKNFFN 686
           + T  ++   P+    LY    T+I L+++F+S  L+ F   FFN
Sbjct: 112 VFTYNITNSTPL-LKKLYGGNSTIIFLLIRFKSFSLLNFNLLFFN 155


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 602 KRSKSNWAAS*KLRCGDFYQ 543
           K SK +WAA  K++ GD  Q
Sbjct: 31  KESKVSWAALKKMKAGDMEQ 50


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 393 VCAREAGLDLVNLDHCVANVGDELDTR 473
           VCA E G+DL   D     + D+ D +
Sbjct: 32  VCAEENGIDLKKADDVKKGIFDKNDEK 58


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 572 RRLPSLICFALLDDPNNDITS 634
           RRLP L+   + DD  ND+ +
Sbjct: 342 RRLPKLLLMRVPDDLLNDLAA 362


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -2

Query: 454 PTFATQWSKLTRSKPASRAQTYEPC 380
           PT +  +S    S  AS AQ   PC
Sbjct: 370 PTLSESYSSYVNSMYASGAQFATPC 394


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,697
Number of Sequences: 438
Number of extensions: 4738
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)