Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0054
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42310.1 68418.m05149 pentatricopeptide (PPR) repeat-containi...    27   9.0  
At4g33090.1 68417.m04715 aminopeptidase M similar to SP|Q11011 P...    27   9.0  

>At5g42310.1 68418.m05149 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 709

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 501 PLVGQRLLELWYPTHHQHSQH 439
           PLV  R   L++ THH H  H
Sbjct: 8   PLVSTRFHSLYFLTHHHHHHH 28


>At4g33090.1 68417.m04715 aminopeptidase M similar to SP|Q11011
           Puromycin-sensitive aminopeptidase (EC 3.4.11.-) (PSA)
           {Mus musculus}; contains Pfam profile PF01433: Peptidase
           family M1
          Length = 879

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = +1

Query: 22  MSVKVILCLVLACTYVEALQTVNGKIKISVGTTAGCSDTVNFISQQLKEAYDLYKEYLEI 201
           MS  ++  +V    YVE   T +G IK+ V    G +D   F      +  DL+KEY  +
Sbjct: 196 MSTYLVAIVVGLFDYVED-HTSDG-IKVRVYCQVGKADQGKFALHVGAKTLDLFKEYFAV 253

Query: 202 EY 207
            Y
Sbjct: 254 PY 255


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,238,059
Number of Sequences: 28952
Number of extensions: 323169
Number of successful extensions: 893
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)