Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0053
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce...    26   5.5  
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    26   5.5  

>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 171 DTLHNDVAIINHNHVGFTNNIQRINLASEATTL 269
           DT+     ++N  HV   N++Q +   SEA TL
Sbjct: 230 DTVKQFEGMMNQTHVKAINHLQEVVRVSEAQTL 262


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 213 VGFTNNIQRINLASEATTLLVLGPGLPASEGPPMLLRE 326
           + FT +  RI ++ +    +  G GLP  +GP +L  +
Sbjct: 89  IDFTGHSMRIPVSEDMLGRVFNGSGLPIDKGPNLLAED 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,211,850
Number of Sequences: 5004
Number of extensions: 36663
Number of successful extensions: 137
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)