Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0053
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0306 + 2499350-2499678,2500041-2500137                           31   0.81 
12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916           29   3.3  
11_06_0156 + 20748472-20748951                                         29   4.3  
09_04_0130 - 14905044-14905505,14905865-14905933,14906000-149061...    29   4.3  
02_05_0787 - 31742685-31742702,31742703-31742744,31742993-317430...    29   4.3  
03_05_0373 + 23581812-23583293                                         28   5.7  
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031...    28   7.6  
06_03_0704 + 23706318-23707024,23707093-23707222                       28   7.6  
03_02_0564 - 9477118-9477200,9477617-9477687,9477799-9477944,947...    28   7.6  

>01_01_0306 + 2499350-2499678,2500041-2500137
          Length = 141

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 577 TLAKPAGWPLWQP*ADPNDVIPI 509
           TL +   WP+WQP  D N ++P+
Sbjct: 119 TLGELMDWPIWQPSQDLNSILPV 141


>12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916
          Length = 259

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 149 LDIGGGDPGASGEDVSCAKSEGELTSLGSPG 57
           +++ G D   S    SC  S+G  ++ GSPG
Sbjct: 169 MEVDGNDDSDSSSPTSCVSSDGRSSAGGSPG 199


>11_06_0156 + 20748472-20748951
          Length = 159

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 332 CWLPKQHRRSFRSRQPRPKY 273
           CWLP+  RRS R R  R K+
Sbjct: 6   CWLPRACRRSMRHRSCRTKF 25


>09_04_0130 -
           14905044-14905505,14905865-14905933,14906000-14906104,
           14906625-14906690,14907080-14907268,14907353-14907439,
           14907597-14908118
          Length = 499

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
 Frame = +2

Query: 422 LCVDGSNGRSTCSGDSGG-------PLTIGSGGSVND 511
           + + G  GRS   G  GG       PLT+GSGGS  D
Sbjct: 125 MMLQGLGGRSPAGGGGGGGDGGLLLPLTLGSGGSGGD 161


>02_05_0787 -
           31742685-31742702,31742703-31742744,31742993-31743022,
           31743337-31744183,31744431-31744560,31744682-31744814
          Length = 399

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 141 NVQMHGSYNMDTLHNDVAIINHN--HVGFTNNIQRINLASEATTLLVLGPG 287
           N+QMHGS   D     +   NHN  +   T   + IN A++ TT  +L  G
Sbjct: 275 NIQMHGSSLFDQSAAIINDANHNQDYAASTGEREIINGATKTTTTTLLPEG 325


>03_05_0373 + 23581812-23583293
          Length = 493

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 449 STCSGDSGGPLTIGSGGSVNDRYHIVRISSRLPERPPCRLRQSHI 583
           S+CS D      + SG S++    + RIS   P  PP RL   H+
Sbjct: 418 SSCSSDGERRFVVYSG-SLDGSVKVWRISDIEPTNPPPRLPSPHV 461


>08_02_1480 +
           27401923-27402158,27402847-27402982,27403119-27403168,
           27403810-27403813,27404394-27404494,27405084-27406305
          Length = 582

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 79  SSPSLLAQLTSSPEAPGSPPP 141
           SS S  +  +SSP AP SPPP
Sbjct: 7   SSTSSSSSASSSPRAPSSPPP 27


>06_03_0704 + 23706318-23707024,23707093-23707222
          Length = 278

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +2

Query: 434 GSNGRSTCSGDSGGPLTIGSGGSVNDRYHIVRISSRLPERP 556
           G  GR  C+G  GG    G GG  +   H  R+    P  P
Sbjct: 126 GGGGRKVCNGGGGGSGGKGDGGRRDADAHYRRMIQADPANP 166


>03_02_0564 -
           9477118-9477200,9477617-9477687,9477799-9477944,
           9478051-9478128,9478284-9478388,9478647-9478769,
           9479085-9479171,9479272-9479352,9479443-9479512,
           9479604-9479662,9479763-9479831,9479912-9479962,
           9480063-9480107,9480203-9480276,9480544-9480667,
           9480773-9480940
          Length = 477

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 326 LPKQHRRSFRSRQPRPKYQQSCCFTG*VDALDVV 225
           LP  HR SFR+  PRP         G + A  ++
Sbjct: 15  LPHHHRSSFRTSSPRPSRMVCAAAEGFISAAPIL 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,176,860
Number of Sequences: 37544
Number of extensions: 343888
Number of successful extensions: 1814
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1811
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)