Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0053
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    33   0.14 
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    32   0.41 
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    30   1.7  
Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AL032639-11|CAA21637.2|  426|Caenorhabditis elegans Hypothetical...    29   2.9  
AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical ...    28   5.1  
AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical ...    28   5.1  
AC006630-5|AAK68323.1|  335|Caenorhabditis elegans Collagen prot...    28   5.1  
Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    28   6.8  
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    28   6.8  
L15419-1|AAA17726.1|  308|Caenorhabditis elegans col-40 collagen...    27   8.9  
AF026211-4|AAB71295.1|  416|Caenorhabditis elegans Collagen prot...    27   8.9  
AF003386-13|AAB54250.1|  311|Caenorhabditis elegans Blistered cu...    27   8.9  

>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +2

Query: 350 VSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGGPLTIGSGGSVND 511
           ++L   T A C   +G ++   S  C      ++ CSGDSGG LT     S  +
Sbjct: 236 LTLATETLATCEENWGTSIPFDS-FCTAEEEDKNVCSGDSGGGLTFHQSDSARE 288


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +2

Query: 344 RQVSLQVITNAVCAR--TFGNNVIIASTLCVDGSNGR-STCSGDSGGPLTIGSGG 499
           R++ + +++   C+    +   + + S LC   S G+  +C GDSGGPL     G
Sbjct: 197 REIHVPLLSTLFCSSLPNYIGRIHLPSMLCAGYSYGKIDSCQGDSGGPLMCARDG 251


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 10/110 (9%)
 Frame = +3

Query: 33  VTAAHCWRTRRAQARQFTLALGTANIFSGGTRVTTSNVQMHGSYNMDTLHNDVAIINHNH 212
           VTAAHC    + Q R F       N  +     +     +H  YN  T  ND+A++  + 
Sbjct: 77  VTAAHC--ALQLQTRSFVYVREPKN--NRERSFSVKEAYIHSGYNNQTADNDIALLRISS 132

Query: 213 VGFTNNIQRINLASEATTLL-------VLGPGLPASE---GPPMLLREPT 332
                 I+ + L  + + LL       V+G GL   E   G P L+   T
Sbjct: 133 DLSKLGIKPVCLVHDDSKLLKQYKNGVVIGYGLTLGEDSSGEPKLINSQT 182



 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +2

Query: 329 NNQQKRQVSLQVITNAVCARTFGN----NVIIASTLCVDGSNGRSTCSGDSGGPLTI 487
           N+Q  +  S+ +I++  C +T+      +V I       G+    T  GDSGGPL I
Sbjct: 179 NSQTLQSTSVPIISDDDCVKTWRFLSLLSVKITGYQICAGAYLHGTAPGDSGGPLLI 235


>Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical
           protein F17C8.2 protein.
          Length = 296

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 134 GDPGASGEDVSCAKSEGELTSLGSPGPP 51
           G+PGA G+D    K +GE    G PGPP
Sbjct: 201 GEPGAPGKDGE--KGKGEPGPAGPPGPP 226


>AL032639-11|CAA21637.2|  426|Caenorhabditis elegans Hypothetical
           protein Y38F1A.10b protein.
          Length = 426

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +2

Query: 383 ARTFGNNVIIASTLCVDGSNGRSTCSG-DSGGPLTIGSGGSVNDRYHIVRISSRLPERPP 559
           AR+ GN++   S +    S+G    S  ++    ++G     N   +   +    PE PP
Sbjct: 65  ARSVGNSLSNGSVVSTTSSDGDVQLSNKENSNDKSVGDKNG-NTTTNKTTVEPPPPEEPP 123

Query: 560 CRLRQSHILQLLD 598
            R+R SH  +L D
Sbjct: 124 VRVRASHREKLSD 136


>AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical
           protein F21E9.5 protein.
          Length = 864

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -1

Query: 540 LELIRTM*YRSLTLPPLPMVRGPPESPLQVLRPLEPST-QRVEAMITLFPNVRA 382
           +E+  T  +RS   PP P +  PP  P+ +  PL P     + A I  FPN +A
Sbjct: 363 IEMFYTSLFRSRKTPPPPQLPTPP--PI-MAEPLPPFLFGEIRAAINSFPNGKA 413


>AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical
           protein R155.2 protein.
          Length = 1308

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +3

Query: 150 MHGSYNMDTLHNDVAIINHNHVGFTNNIQRINLASEATTLLVLGPGLPASEGPPMLLREP 329
           +H S N  TL N   I+N     F  ++Q+IN   E   L+    G   +     +L++ 
Sbjct: 501 LHDSMNQHTLDNMSQIVNVTDAKFLESVQKIN---ETYKLIFKEKGSMTTLSKGTILKDV 557

Query: 330 TTNKN 344
           TT  N
Sbjct: 558 TTVVN 562


>AC006630-5|AAK68323.1|  335|Caenorhabditis elegans Collagen protein
           165 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 434 GSNGRSTCSGDSGGPLTIGSGGSVNDRYH 520
           G  GR+   G++GGP  +GS G   D +H
Sbjct: 297 GRKGRAGHKGEAGGPGGLGSKGPNGDCFH 325


>Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK863.2 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -2

Query: 134 GDPGASGEDVSCAKSEGELTSLGSPGPP 51
           G+PGA G+    A S GE    G PGPP
Sbjct: 122 GNPGADGD----AGSPGEAGGAGPPGPP 145


>Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK863.2 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -2

Query: 134 GDPGASGEDVSCAKSEGELTSLGSPGPP 51
           G+PGA G+    A S GE    G PGPP
Sbjct: 122 GNPGADGD----AGSPGEAGGAGPPGPP 145


>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
            ATPase protein.
          Length = 2395

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +2

Query: 302  RTSDAASGANNQQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGG 475
            R + AA+G+N Q  +Q   Q  +   C +     V+ + +   DG  G ST  G  GG
Sbjct: 2071 RNAAAAAGSNVQFIQQQQQQQQSGKNCGQGQSFVVMGSQSSSNDGQGGASTVGGGGGG 2128


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
            protein Y111B2A.22 protein.
          Length = 2395

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +2

Query: 302  RTSDAASGANNQQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGG 475
            R + AA+G+N Q  +Q   Q  +   C +     V+ + +   DG  G ST  G  GG
Sbjct: 2071 RNAAAAAGSNVQFIQQQQQQQQSGKNCGQGQSFVVMGSQSSSNDGQGGASTVGGGGGG 2128


>L15419-1|AAA17726.1|  308|Caenorhabditis elegans col-40 collagen
           protein.
          Length = 308

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 134 GDPGASGEDVSCAKSEGELTSLGSPGPP 51
           G+PGA G+      + G   + G PGPP
Sbjct: 219 GNPGAPGQVTETPGTPGPAGAAGPPGPP 246


>AF026211-4|AAB71295.1|  416|Caenorhabditis elegans Collagen protein
           40 protein.
          Length = 416

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 134 GDPGASGEDVSCAKSEGELTSLGSPGPP 51
           G+PGA G+      + G   + G PGPP
Sbjct: 229 GNPGAPGQVTETPGTPGPAGAAGPPGPP 256


>AF003386-13|AAB54250.1|  311|Caenorhabditis elegans Blistered
           cuticle protein 2 protein.
          Length = 311

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 134 GDPGASGEDVSCAKSEGELTSLGSPGPPAM 45
           G PG +GE   C +        GSPGPP +
Sbjct: 218 GQPGDNGEPGKCDEVNVAQGPPGSPGPPGL 247


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,939,722
Number of Sequences: 27780
Number of extensions: 242324
Number of successful extensions: 1159
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)