Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0053
         (660 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73500.1 68414.m08509 mitogen-activated protein kinase kinase...    33   0.17 
At4g27290.1 68417.m03916 S-locus protein kinase, putative simila...    31   0.51 
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro...    29   2.7  
At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gen...    28   6.3  
At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 ...    27   8.4  
At5g10380.1 68418.m01204 zinc finger (C3HC4-type RING finger) fa...    27   8.4  
At1g26150.1 68414.m03192 protein kinase family protein similar t...    27   8.4  
At1g19960.1 68414.m02501 expressed protein                             27   8.4  

>At1g73500.1 68414.m08509 mitogen-activated protein kinase kinase
           (MAPKK), putative (MKK9) mitogen-activated protein
           kinase kinase (MAPKK) family, PMID:12119167
          Length = 310

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +2

Query: 335 QQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGGPLTIGSGGSV 505
           +++RQ++L++    +  R F  +   A+T  V G NG S C  +    L  G+GG V
Sbjct: 5   RERRQLNLRLPLPPISDRRFSTSSSSATTTTVAGCNGISACDLEKLNVLGCGNGGIV 61


>At4g27290.1 68417.m03916 S-locus protein kinase, putative similar
           to S-receptor kinase gi|392557|gb|AAA62232; contains
           Pfam domains PF00954: S-locus glycoprotein family,
           PF00069: Protein kinase domain and PF01453: Lectin
           (probable mannose binding)
          Length = 772

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +2

Query: 464 DSGGPLTIGSGGSV---NDRYHIVRISSRLPERPPCRLRQSHILQLLDPG 604
           D  G L +   GS+   NDR HI+  SS  P      LR + I+Q+LD G
Sbjct: 74  DLSGTLKVSENGSLCLFNDRNHIIWSSSSSPSSQKASLR-NPIVQILDTG 122


>At5g58160.1 68418.m07280 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|Q05858 Formin (Limb deformity protein) {Gallus
           gallus}; contains Pfam profile PF02181: Formin Homology
           2(FH2) Domain
          Length = 1307

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +3

Query: 291 PASEGPPMLLREPTTNKNAK*ASRSLP-TPSAPARLETM*SLPPP 422
           P    PP     PT   N   A +S P  P AP RL T  + PPP
Sbjct: 728 PPPPPPPPPPAPPTPQSNGISAMKSSPPAPPAPPRLPTHSASPPP 772


>At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gene
           for histone protein GB:X15142 GI:3204 [Physarum
           polycephalum]
          Length = 614

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/66 (25%), Positives = 26/66 (39%)
 Frame = +2

Query: 305 TSDAASGANNQQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGGPLT 484
           +++A SG + +             V   + G +     T     S G +T  G SGG  T
Sbjct: 478 STEAGSGTSTETSSMGGGSAAAGGVSESSSGGSTAAGGT-SESASGGSATAGGASGGTYT 536

Query: 485 IGSGGS 502
             +GGS
Sbjct: 537 DSTGGS 542


>At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 Pfam
            PF00400: WD domain, G-beta repeats;
          Length = 1327

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 504  TLPPLPMVRGPPES-PLQVLRPLEPSTQRVEAMITLFPNVRAQ 379
            T PP P+   PPE+     ++P E +    E  +T +P +R+Q
Sbjct: 1278 TAPPEPITTAPPETVTTTAVKPTENAA--TERRVTNYPPIRSQ 1318


>At5g10380.1 68418.m01204 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 301

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +1

Query: 283 LGCRLRKDLRCCFGSQQPTKTPSEPP 360
           L C   KDLR CF    P   P  PP
Sbjct: 10  LSCLQFKDLRFCFRQYPPPPPPPPPP 35


>At1g26150.1 68414.m03192 protein kinase family protein similar to
           Pto kinase interactor 1 GI:3668069 from [Lycopersicon
           esculentum]
          Length = 760

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 498 PPLPMVRGPPESPLQVLRPLEPS 430
           PP P + GPP + + V  P EPS
Sbjct: 77  PPSPSLTGPPPTTIPVSPPPEPS 99


>At1g19960.1 68414.m02501 expressed protein
          Length = 64

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 413 ASTLCVDGSNGRSTCSGDSGGPLTIGSGGSVNDR 514
           +ST  V G  G S C+G  GG  + GSGGS  ++
Sbjct: 8   SSTTTVGGIAGGSGCNGGGGGSGS-GSGGSFGNQ 40


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,492,201
Number of Sequences: 28952
Number of extensions: 230551
Number of successful extensions: 933
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)