Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0051
         (387 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    31   0.083
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    29   0.19 
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch...    27   0.78 
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ...    27   1.0  
SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces po...    26   1.8  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    24   7.2  
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    24   9.6  

>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 30.7 bits (66), Expect = 0.083
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +2

Query: 2   DEEGKIDSERLRHALMTWGDKFSADEVHEAYDQMDIDDKGYIDTTKLIAML 154
           DE GKI    LR       +     E+    ++ D+D  G I+  + IA++
Sbjct: 122 DETGKISLRNLRRVAKELNENIDDQELEAMIEEFDLDQDGEINEQEFIAIM 172


>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 29.5 bits (63), Expect = 0.19
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 2   DEEGKID-SERLRHALMTWGDKFSADEVHEAYDQMDIDDKGYIDTTKLIAMLTA 160
           D  G ID +E L        D  + +EV EA+   D D  GYI   +L  +LT+
Sbjct: 60  DGNGTIDFTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTS 113


>SPAC1687.14c |||EF hand family protein, unknown
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 27.5 bits (58), Expect = 0.78
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 74  DEVHEAYDQMDIDDKGYID 130
           +E  EA+D  D+  KGYID
Sbjct: 12  EEAEEAFDLFDVTHKGYID 30


>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 524

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 32  LRHALMTWGDKFSADEVHEAYDQMDI 109
           L+HAL   G K S DE+HEA D+ ++
Sbjct: 474 LQHALQDIGTK-SLDELHEAVDKHEV 498


>SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 235

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 306 FYIHNNLLFPTFIYLYIMKI 365
           F +H N  FP+F+ LY++++
Sbjct: 135 FDVHCNSFFPSFVLLYVIQL 154


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 71  ADEVHEAYDQMDIDDKGYID 130
           ++E+   +D +D  D+GYID
Sbjct: 335 SEELARIWDTVDTQDRGYID 354


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 62  KFSADEVHEAYDQMDIDDKGYIDTTKLIAML 154
           K   DE+ EA+   DID  G I T+ + ++L
Sbjct: 5   KEQTDEMKEAFVLYDIDKDGLIPTSHVGSVL 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,257,487
Number of Sequences: 5004
Number of extensions: 19964
Number of successful extensions: 54
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)