Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0050
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   101   9e-23
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    25   7.5  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   7.5  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    25   7.5  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  101 bits (242), Expect = 9e-23
 Identities = 47/83 (56%), Positives = 68/83 (81%), Gaps = 1/83 (1%)
 Frame = +3

Query: 9   VYAILAIGLLGFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQIN 188
           ++A+L+I LLG +V +HH+FTVG+D+DTRAYF++AT++IA+PTGIKIF  LAT+ G  I 
Sbjct: 280 LWAMLSIALLGLMVWSHHLFTVGLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQ 339

Query: 189 YN-PNIL*RLGFVFLFTVGGLTG 254
           ++   +L  +GF+ LFT+GGLTG
Sbjct: 340 WSRVPMLYAIGFLILFTIGGLTG 362



 Score = 90.2 bits (214), Expect = 2e-19
 Identities = 48/98 (48%), Positives = 57/98 (58%)
 Frame = +2

Query: 212 IRFCIFIHSRRINRLILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXXN*YPLFT 391
           I F I      +  +IL+NS +DI  HDTY+VVAHFHYVLS               P   
Sbjct: 349 IGFLILFTIGGLTGVILSNSVLDIAFHDTYFVVAHFHYVLSMGALFGLCGAYYW-SPKMF 407

Query: 392 GLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRR 505
           GL  N  +  IQF+ +FIGVNI F PQHFLGL G+PRR
Sbjct: 408 GLMYNETLASIQFWILFIGVNIVFGPQHFLGLNGMPRR 445


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 9   VYAILAIGLLGFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGI 143
           + A+  I L+GF+  + ++ T+G+ I T        I I VP  +
Sbjct: 535 ITAMFIIALIGFVFSSINLLTLGVPIATIIIRALDLITIVVPPAL 579


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 7/22 (31%), Positives = 18/22 (81%)
 Frame = +2

Query: 245 INRLILANSSIDITLHDTYYVV 310
           ++ ++LAN+++D T+H  Y+++
Sbjct: 657 LDHILLANATLDKTVHSAYWLM 678


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 571 EKYMNLMKKLYFMKYMSLDNLISSRYSS 488
           E  ++ M+K+YF+KY +    +  RY S
Sbjct: 250 ENELSSMRKVYFVKYKTEYEFLQKRYLS 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,888,324
Number of Sequences: 5004
Number of extensions: 29256
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)