Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0049
(827 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0047 + 17557087-17558350,17558396-17558475,17559115-175591... 91 1e-18
01_01_0417 - 3135502-3135672,3135759-3135947,3136037-3136154,313... 31 1.1
02_05_0153 - 26315923-26316024,26316173-26316267,26316737-263167... 30 2.6
02_03_0170 + 15935942-15936007,15936107-15936239,15936335-159364... 30 2.6
12_01_0413 + 3286897-3286990,3287269-3287432 29 3.4
10_07_0128 + 13195958-13196011,13196399-13196407,13197257-131973... 29 3.4
09_04_0588 - 18789971-18790000,18790334-18790507,18791470-187919... 29 3.4
05_05_0170 + 22913791-22914315,22914418-22914581,22914675-229153... 29 3.4
06_01_0087 + 695443-695655,696669-696983 29 4.5
04_03_0739 + 19180048-19182039 29 4.5
04_03_0737 - 19152942-19154930 29 4.5
03_02_0652 - 10188076-10188243,10188353-10188541,10188633-101887... 29 6.0
01_06_0785 - 31985455-31988463 29 6.0
09_03_0088 - 12242020-12242941,12243467-12243550,12243591-12244438 28 7.9
>01_05_0047 +
17557087-17558350,17558396-17558475,17559115-17559149,
17559545-17559551,17560405-17560719
Length = 566
Score = 90.6 bits (215), Expect = 1e-18
Identities = 39/78 (50%), Positives = 55/78 (70%)
Frame = +3
Query: 9 ENTKLPFLPTPMGKGVVADESEYCVSTARTQALLKADVILLLGARMNWMLHFGQPPRYAP 188
+ T +PFLPTPMGKGVV D + AR+ A+ + DV L++GAR+NW+LHFG+PP+++
Sbjct: 236 DTTGIPFLPTPMGKGVVPDTHPLSATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSK 295
Query: 189 DVKIIQVEISPEEFHNSK 242
DVK I V++ EE K
Sbjct: 296 DVKFILVDVCEEEIELRK 313
Score = 49.6 bits (113), Expect = 3e-06
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Frame = +2
Query: 251 ITVHSDIRPFTEALVKRLSERKFSLQPQNNSWWQGLKQKQKANTEFVEAQASSTAVPLNY 430
+ + D + E + + + ++ F L P ++ W + + +K + N +EAQ + VP N+
Sbjct: 316 VGIVGDAKRVVELINREIKDQPFCLAP-SHPWVEAITKKARDNVLKMEAQLAKDVVPFNF 374
Query: 431 YTVFKTVQQGIPKDS----IIVSEGANTMDL 511
T + ++ I + ++VSEGANTMD+
Sbjct: 375 LTPLRIIRDAILAEGNPAPVVVSEGANTMDV 405
Score = 37.9 bits (84), Expect = 0.010
Identities = 26/62 (41%), Positives = 32/62 (51%)
Frame = +1
Query: 511 GRGLLLNNHPRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGME 690
GR +L+ N PR RLDA A+A P + V+ VEGDS FGFS ME
Sbjct: 406 GRAVLVQNEPRTRLDAA-----------AVAE--------PDRLVVAVEGDSGFGFSAME 446
Query: 691 IE 696
+E
Sbjct: 447 VE 448
>01_01_0417 -
3135502-3135672,3135759-3135947,3136037-3136154,
3136398-3137048,3137146-3137309,3138598-3139098
Length = 597
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 589 GFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIETMFRY 711
G+++ A + A KRVI GD +F + E+ TM R+
Sbjct: 450 GWSVGATLGYAKAAKDKRVIACIGDGSFQVTAQEVSTMLRW 490
>02_05_0153 -
26315923-26316024,26316173-26316267,26316737-26316784,
26316925-26317045,26317682-26317736,26317820-26317935,
26318479-26318547,26318909-26319018,26319985-26320069
Length = 266
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +2
Query: 149 LDAALWTTAEICARR*NYSGRNIS*RISQQQEIRITVHSDIRPFTEALVKRLSER-KFSL 325
L WT+AE+ + G+ +S +Q+++ + D+ P E ++RL R +
Sbjct: 21 LQVGKWTSAEVVTGSTAWIGKGLSCVCAQRRDSDARLSFDLTPVQEECLQRLQNRLEVQY 80
Query: 326 QPQNNSWWQGLKQKQKAN 379
N+ + LK +A+
Sbjct: 81 DSSNSDHQEALKDLWRAS 98
>02_03_0170 +
15935942-15936007,15936107-15936239,15936335-15936406,
15936746-15936790,15937265-15937366,15937461-15937629,
15937754-15937852,15938288-15938437,15940130-15940169,
15940632-15940689,15942454-15942542,15943297-15943395,
15943486-15943601,15943685-15943803,15944350-15944363
Length = 456
Score = 29.9 bits (64), Expect = 2.6
Identities = 21/68 (30%), Positives = 32/68 (47%)
Frame = +2
Query: 317 FSLQPQNNSWWQGLKQKQKANTEFVEAQASSTAVPLNYYTVFKTVQQGIPKDSIIVSEGA 496
F+L+PQN W + + + + + E ++ SS LN+ V K+ S A
Sbjct: 50 FNLKPQNKFWSESVIRTEFDDLEGSTSRDSSKKALLNFTRAAMRVLMLYFKNLEFFSNIA 109
Query: 497 NTMDLAEV 520
N M LAEV
Sbjct: 110 NYMSLAEV 117
>12_01_0413 + 3286897-3286990,3287269-3287432
Length = 85
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Frame = -3
Query: 636 TRCIVSAPHC---CCNSEARSYPHSAKCTSI 553
T C V PHC CN++ ++ S KC S+
Sbjct: 35 TECTVETPHCTMDSCNAKCKAEATSRKCNSL 65
>10_07_0128 +
13195958-13196011,13196399-13196407,13197257-13197337,
13197375-13197856,13198287-13198323,13198425-13198529
Length = 255
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 526 LNNHPRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGKRVICV 654
L N R + D GT+G ++I A +W DY K VI +
Sbjct: 62 LQNDIRVKPDLDALGTLGDAGWYSIRAILWAVDYELPKTVIAL 104
>09_04_0588 -
18789971-18790000,18790334-18790507,18791470-18791954,
18792912-18793266
Length = 347
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 478 HCQRRSEYHGFGRGLLLN-NHPRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGKRVIC 651
H QR + G G G +++ +HP HRL F + + M C++Y GKR +C
Sbjct: 32 HQQRGEDGGGGGDGEMVHFSHPEHRLARFDFPYLFM--------CMGCKEYGAGKRFMC 82
>05_05_0170 +
22913791-22914315,22914418-22914581,22914675-22915325,
22915425-22915542,22915635-22915823,22915948-22916118
Length = 605
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 589 GFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIETMFR 708
G+++ A + A KRVI GD +F + ++ TM R
Sbjct: 458 GWSVGATLGYAQAAKDKRVISCIGDGSFQMTAQDVSTMLR 497
>06_01_0087 + 695443-695655,696669-696983
Length = 175
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 504 WIWPRFIAQQSSETQARCWYIWHYGGRTW-LRYC 602
WI PRF + +E +AR + H GG++W YC
Sbjct: 72 WIPPRF-QHRLAEPEARTAAVLHSGGKSWATSYC 104
>04_03_0739 + 19180048-19182039
Length = 663
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +3
Query: 102 ALLKADVILLLGARMNWMLHFGQPPRYAPDVKIIQVEISPEEFHNSKK 245
A+ AD++L LG R + + G+ +A KI+ V+I P E +K+
Sbjct: 348 AVDNADLLLALGVRFDDRVT-GKVEAFASRAKIVHVDIDPSELGKNKQ 394
>04_03_0737 - 19152942-19154930
Length = 662
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +3
Query: 102 ALLKADVILLLGARMNWMLHFGQPPRYAPDVKIIQVEISPEEFHNSKK 245
A+ AD++L LG R + + G+ +A KI+ V+I P E +K+
Sbjct: 352 AVDNADLLLALGVRFDDRVT-GKVEAFASRAKIVHVDIDPSELGKNKQ 398
>03_02_0652 -
10188076-10188243,10188353-10188541,10188633-10188750,
10188841-10189491,10189870-10190033,10190137-10190574
Length = 575
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 589 GFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIETMFR 708
G+++ A + A KRVI GD +F + ++ TM R
Sbjct: 429 GWSVGALLGYAQGAKDKRVIACIGDGSFQVTAQDVSTMIR 468
>01_06_0785 - 31985455-31988463
Length = 1002
Score = 28.7 bits (61), Expect = 6.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 616 CRDYAPGKRVICVEGDSAFGFSGMEIETMFRY 711
CR GK + C+ G+S G + + +E +R+
Sbjct: 464 CRKILYGKGIACISGESGIGKTDLVLEYAYRF 495
>09_03_0088 - 12242020-12242941,12243467-12243550,12243591-12244438
Length = 617
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 103 ACVRAVDTQYSDSSATTPLP 44
AC+R VDT S ++ TPLP
Sbjct: 453 ACLRPVDTDTSSATTVTPLP 472
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,123,156
Number of Sequences: 37544
Number of extensions: 479602
Number of successful extensions: 1243
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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