Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0049
(827 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59568| Best HMM Match : TPP_enzyme_C (HMM E-Value=3.6e-34) 50 2e-06
SB_16464| Best HMM Match : Clathrin (HMM E-Value=1.6) 32 0.49
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1) 30 2.6
SB_11767| Best HMM Match : Kinesin (HMM E-Value=0) 30 2.6
SB_27564| Best HMM Match : IPT (HMM E-Value=8.6) 29 3.5
SB_55803| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_50451| Best HMM Match : Avirulence (HMM E-Value=0.14) 29 4.6
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_3484| Best HMM Match : Ribosomal_L17 (HMM E-Value=2.4) 28 8.0
>SB_59568| Best HMM Match : TPP_enzyme_C (HMM E-Value=3.6e-34)
Length = 521
Score = 50.4 bits (115), Expect = 2e-06
Identities = 29/75 (38%), Positives = 40/75 (53%)
Frame = +1
Query: 496 EYHGFGRGLLLNNHPRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGKRVICVEGDSAFG 675
++ G +L P LD G FGT+GVG GFA+ A + CR P V + GD + G
Sbjct: 359 DFVGTAAYILRPRAPLSWLDPGAFGTLGVGGGFALGAKL-CR---PDSDVWVMYGDGSLG 414
Query: 676 FSGMEIETMFRYKLP 720
+S E +T R+K P
Sbjct: 415 YSIAEFDTFVRHKTP 429
>SB_16464| Best HMM Match : Clathrin (HMM E-Value=1.6)
Length = 482
Score = 32.3 bits (70), Expect = 0.49
Identities = 18/62 (29%), Positives = 26/62 (41%)
Frame = +1
Query: 331 SKQQLVAGTETETKSKHRICRGSSKQHCSTTELLHCFQNSSTRHSKRFNHCQRRSEYHGF 510
+K Q + + SKH + R CS+ Q S R S +F +RRS F
Sbjct: 13 TKTQGLVNEAGDFSSKHDMGRSPKSSRCSSVAWSDIEQGCSPRLSSKFRGLERRSSVENF 72
Query: 511 GR 516
G+
Sbjct: 73 GQ 74
>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
Length = 2075
Score = 29.9 bits (64), Expect = 2.6
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Frame = +1
Query: 283 RSSCKKVVRKEVLIATSKQQLVAGTETETKSKHRICRGSSKQHCSTTELLHCFQNSSTRH 462
+ + + V + I TS QLV ET R+ S+ + L+HC R
Sbjct: 1561 QKNAARFVCSDYRITTSTSQLVKTLGWETLEDRRLRNQSTLLYKFHNNLIHCQPPDDLRR 1620
Query: 463 SKRFNHCQRRSE-YHGFGRGLLLNNH 537
++ +R S YH +L N+
Sbjct: 1621 TENIRSSRRHSRTYHQLQANILAFNY 1646
>SB_11767| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 1230
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Frame = +1
Query: 361 TETKSKHRICRGSSKQHCSTTELLHCFQNSSTRHSKRFN--HCQRR---SEYHGFGRGL 522
T T + H C +S HC+ T + HC +ST H + HC + + YH R L
Sbjct: 167 TTTSTAH--CTATSTAHCTATSIAHC-TTTSTAHCTATSTAHCTAKIYCALYHDIYRAL 222
>SB_27564| Best HMM Match : IPT (HMM E-Value=8.6)
Length = 220
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +2
Query: 329 PQNNSWWQGLKQKQKANTEFVEAQASSTAVPLNYYTV-FKTVQQGIPKDSIIVSEGANTM 505
P + Q + T F+EAQ S ++Y ++ QQG P ++ SEG ++
Sbjct: 18 PSSKRGRQAPTSRPTGRTGFLEAQLSVIGKTVSYALASWRPTQQGPPSPPVVASEGTESL 77
>SB_55803| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 29.1 bits (62), Expect = 4.6
Identities = 25/105 (23%), Positives = 42/105 (40%)
Frame = +1
Query: 232 TTARNQNYSTLRH*TFYRSSCKKVVRKEVLIATSKQQLVAGTETETKSKHRICRGSSKQH 411
TT N ++T RH +S R L T++ ++H +++ +
Sbjct: 12 TTRHNSLHNTTRH-----NSLHNTTRHNSLHNTTRHNTTRHNSLHNTTRHNSLNSTTRHN 66
Query: 412 CSTTELLHCFQNSSTRHSKRFNHCQRRSEYHGFGRGLLLNNHPRH 546
TT H NS+TRH+ ++ + H R L+N RH
Sbjct: 67 --TTR--HNSLNSTTRHNTTRHNSLHNTTKHNTTRHNSLHNTTRH 107
>SB_50451| Best HMM Match : Avirulence (HMM E-Value=0.14)
Length = 1085
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +2
Query: 335 NNSWWQGLKQKQKANTEFVEAQASSTAVPLNYYTVFKTVQQ 457
NN++++ L+QKQ+ + ++T VP N Y ++ ++Q
Sbjct: 347 NNNYYRPLEQKQQLLLPSLGTTTTTTTVPWNNYYYYRHLEQ 387
>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4527
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 422 LNYYTVFKTVQQGIPKDSIIVSEGANTMDLAEVYCSTIIRDT 547
L+ T+FK + + ++ G + DLA VYCS I+R T
Sbjct: 4363 LHCETIFKKAMKRLYGLRVLKKSGLTSEDLATVYCS-IVRST 4403
>SB_3484| Best HMM Match : Ribosomal_L17 (HMM E-Value=2.4)
Length = 103
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 108 VELVYAQLIHSTQIRQLPLLYPLVWARKVI 19
+E Y Q++ S R +P+LYPL+ R +I
Sbjct: 74 IEGSYVQMVESAGARVVPILYPLMVIRLLI 103
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,772,518
Number of Sequences: 59808
Number of extensions: 564537
Number of successful extensions: 1380
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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