Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0049
(827 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g17380.1 68418.m02038 pyruvate decarboxylase family protein s... 91 6e-19
At1g54300.1 68414.m06190 hypothetical protein 32 0.40
At3g48560.1 68416.m05302 acetolactate synthase, chloroplast / ac... 30 1.6
At5g54960.1 68418.m06845 pyruvate decarboxylase, putative strong... 30 2.2
At5g01320.1 68418.m00044 pyruvate decarboxylase, putative strong... 30 2.2
At4g25820.1 68417.m03714 xyloglucan:xyloglucosyl transferase / x... 30 2.2
At5g01330.1 68418.m00045 pyruvate decarboxylase, putative strong... 29 2.8
At4g33070.1 68417.m04711 pyruvate decarboxylase, putative strong... 29 2.8
At3g07870.1 68416.m00962 F-box family protein contains F-box dom... 29 3.8
At2g35110.1 68415.m04307 HEM protein-related weak similarity to ... 28 8.7
>At5g17380.1 68418.m02038 pyruvate decarboxylase family protein
similar to 2-hydroxyphytanoyl-CoA lyase [Homo sapiens]
GI:6273457; contains InterPro entry IPR000399: Pyruvate
decarboxylase
Length = 572
Score = 91.5 bits (217), Expect = 6e-19
Identities = 40/78 (51%), Positives = 56/78 (71%)
Frame = +3
Query: 9 ENTKLPFLPTPMGKGVVADESEYCVSTARTQALLKADVILLLGARMNWMLHFGQPPRYAP 188
E T +PFLPTPMGKG++ D E+ + AR+ A+ K DV L++GAR+NW+LHFG+ P++
Sbjct: 241 EITGIPFLPTPMGKGLLPDTHEFSATAARSLAIGKCDVALVVGARLNWLLHFGESPKWDK 300
Query: 189 DVKIIQVEISPEEFHNSK 242
DVK I V++S EE K
Sbjct: 301 DVKFILVDVSEEEIELRK 318
Score = 82.6 bits (195), Expect = 3e-16
Identities = 40/69 (57%), Positives = 50/69 (72%)
Frame = +1
Query: 511 GRGLLLNNHPRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGME 690
GR +L+ PR RLDAGT+GTMGVG G+ IAAA+ +P + V+ VEGDS FGFS ME
Sbjct: 411 GRSVLVQKEPRTRLDAGTWGTMGVGLGYCIAAAV----ASPDRLVVAVEGDSGFGFSAME 466
Query: 691 IETMFRYKL 717
+ET+ RY L
Sbjct: 467 VETLVRYNL 475
Score = 48.8 bits (111), Expect = 4e-06
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Frame = +2
Query: 266 DIRPFTEALVKRLSERKFSLQPQNNSWWQGLKQKQKANTEFVEAQASSTAVPLNYYTVFK 445
D + L + + + F L ++NSW + + +K K N E +E Q + VP N+ T +
Sbjct: 326 DAKTVIGLLNREIKDDPFCLG-KSNSWVESISKKAKENGEKMEIQLAKDVVPFNFLTPMR 384
Query: 446 TVQQGI----PKDSIIVSEGANTMDL 511
++ I ++VSEGANTMD+
Sbjct: 385 IIRDAILAVEGPSPVVVSEGANTMDV 410
>At1g54300.1 68414.m06190 hypothetical protein
Length = 314
Score = 32.3 bits (70), Expect = 0.40
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +1
Query: 475 NHCQRRSEYHGFGRGLLLNNHPRHRLDAGTFGTMGVGPG-FAIAAAMWCRD-YAPGKRVI 648
N+ R S H G + NN P+H G G +GVG G F++A W R+ Y+P V
Sbjct: 163 NNSSRNSHSHTVGFNV--NNGPQHHFSQG-IGGVGVGEGNFSMANGGWQRNSYSP---VN 216
Query: 649 CVEGDSAFGFSGME 690
+ ++A F GM+
Sbjct: 217 SLNYNTANEFFGMQ 230
>At3g48560.1 68416.m05302 acetolactate synthase, chloroplast /
acetohydroxy-acid synthase (ALS) nearly identical to
SP|P17597 Acetolactate synthase, chloroplast precursor
(EC 2.2.1.6, formerly EC 4.1.3.18) (Acetohydroxy-acid
synthase) (ALS) {Arabidopsis thaliana}
Length = 670
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +1
Query: 538 PRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIETMFRYKL 717
PR L +G G MG G AI A++ P V+ ++GD +F + E+ T+ L
Sbjct: 501 PRQWLSSGGLGAMGFGLPAAIGASV----ANPDAIVVDIDGDGSFIMNVQELATIRVENL 556
Query: 718 P 720
P
Sbjct: 557 P 557
>At5g54960.1 68418.m06845 pyruvate decarboxylase, putative strong
similarity to pyruvate decarboxylase 1 [Vitis vinifera]
GI:10732644; contains InterPro entry IPR000399: Pyruvate
decarboxylase
Length = 607
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 589 GFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIETMFR 708
G+++ A + P +RVI GD +F + ++ TM R
Sbjct: 460 GWSVGATLGYAQAMPNRRVIACIGDGSFQVTAQDVSTMIR 499
>At5g01320.1 68418.m00044 pyruvate decarboxylase, putative strong
similarity to pyruvate decarboxylase 1 [Vitis vinifera]
GI:10732644; contains InterPro entry IPR000399: Pyruvate
decarboxylase
Length = 603
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 589 GFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIETMFR 708
G+++ A + P KRV+ GD +F + +I TM R
Sbjct: 456 GWSVGATLGYAQATPEKRVLSFIGDGSFQVTAQDISTMIR 495
>At4g25820.1 68417.m03714 xyloglucan:xyloglucosyl transferase /
xyloglucan endotransglycosylase / endo-xyloglucan
transferase (XTR9) identical to xyloglucan
endotransglycosylase GI:4218963 from [Arabidopsis
thaliana]
Length = 287
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +2
Query: 305 SERKFSLQPQNNSW-WQGLKQKQKANTEFVEAQASSTAVPLNYYTVFKTVQQGIPKD 472
S + + +P +NSW W L Q +V+ + NY T FK QG+PK+
Sbjct: 232 SSKWVTCEPNSNSWMWTTLNPAQYGKMMWVQRDF----MIYNYCTDFKRFPQGLPKE 284
>At5g01330.1 68418.m00045 pyruvate decarboxylase, putative strong
similarity to pyruvate decarboxylase 1 [Vitis vinifera]
GI:10732644; contains InterPro entry IPR000399: Pyruvate
decarboxylase
Length = 592
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 589 GFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIETMFR 708
G+++ A + P KRV+ GD +F + ++ TM R
Sbjct: 445 GWSVGATLGYAQATPEKRVLSFIGDGSFQVTAQDVSTMIR 484
>At4g33070.1 68417.m04711 pyruvate decarboxylase, putative strong
similarity to SP|P51846 Pyruvate decarboxylase isozyme 2
(EC 4.1.1.1) (PDC) {Nicotiana tabacum}; contains
InterPro entry IPR000399: Pyruvate decarboxylase
Length = 607
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 589 GFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIETMFR 708
G+++ A + +P KRV+ GD +F + +I TM R
Sbjct: 460 GWSVGATLGYAQASPEKRVLAFIGDGSFQVTVQDISTMLR 499
>At3g07870.1 68416.m00962 F-box family protein contains F-box domain
Pfam:PF00646
Length = 417
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 138 ARMNWMLHF-GQPPRYAPDVKIIQVEISPEEFHNSKKSE 251
A +N LHF +P R+ PD K + ++ EEF K +
Sbjct: 241 ALVNGRLHFVTRPRRHVPDRKFVSFDLEDEEFKEIPKPD 279
>At2g35110.1 68415.m04307 HEM protein-related weak similarity to
Membrane-associated protein Hem (Dhem-2)
(Swiss-Prot:P55162) [Drosophila melanogaster]; weak
similarity to Nck-associated protein 1 (NAP 1) (p125Nap1)
(Membrane-associated protein HEM-2) (Swiss-Prot:P55161)
[Rattus norvegicus]
Length = 1339
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -2
Query: 160 CSIQFILAPRSSMTSAFSRACVRAVDTQYSDSSATTPL 47
C I L PRSS+ S +R++ TQY ++ +TPL
Sbjct: 1179 CEISPYL-PRSSLESHVPYTILRSIYTQYYSNTPSTPL 1215
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,518,788
Number of Sequences: 28952
Number of extensions: 386519
Number of successful extensions: 1013
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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