Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0048
(727 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb... 137 2e-33
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz... 42 7e-05
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 42 9e-05
SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|... 29 0.51
SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 1.6
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 27 2.1
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 27 2.1
SPAC1002.04c |taf11||transcription factor TFIID complex subunit ... 27 3.6
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe... 26 6.3
SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomy... 26 6.3
>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 574
Score = 137 bits (331), Expect = 2e-33
Identities = 84/246 (34%), Positives = 127/246 (51%), Gaps = 7/246 (2%)
Frame = +3
Query: 9 ENTKLPFLPTPMGKGVVADESEYCVSTARTQALLKADVILLLGARMNWMLHFGQPPRYAP 188
E+T +PFLP+PMGKG++ + VS+AR+ AL ADV+LL GAR+NW+ +G PP+++P
Sbjct: 227 EHTGIPFLPSPMGKGLLPESHPLNVSSARSAALRNADVVLLAGARLNWIFQYGLPPKWSP 286
Query: 189 DVKIIQVEISPEEFHNSKKSEXXXXXXXXXXXXXXXXGCPKGSSHCNLKTTVGGRD*NRT 368
+ K IQ++ + E N+ + + +T R N T
Sbjct: 287 NAKFIQIDTNAETLGNNAADLDLAIWADVGLTIDCLFKLVQTWKYSVGISTPYLRTLNET 346
Query: 369 KSKHRICRGSSKQHCSTTELLHC-------FQNSSTRHSKRFNHCQRRSEYHGYGRGLLL 527
+SK+ S++ ++ + Q+ S + + + GR LL
Sbjct: 347 RSKNEKKALESRKSSIPLQMNYALYVVNEELQSLSLKSKRNITWVSEGANTMDRGRQLLE 406
Query: 528 NNHPRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIETMFR 707
HPR RLDAGT TMGVG G+AIA+A +++ VEGDSAFGFS ME+ET R
Sbjct: 407 VTHPRGRLDAGTMSTMGVGMGYAIASAF----AHSSDKIVVVEGDSAFGFSAMELETAIR 462
Query: 708 YKLPVI 725
+L ++
Sbjct: 463 NQLDLL 468
Score = 29.1 bits (62), Expect = 0.68
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = +1
Query: 358 ETEQKANTEFVEAQASSTAVPLNY--YTVFKTVQQGIPKDS---IIVSEGANTMD 507
ET K + +E++ SS + +NY Y V + +Q K VSEGANTMD
Sbjct: 345 ETRSKNEKKALESRKSSIPLQMNYALYVVNEELQSLSLKSKRNITWVSEGANTMD 399
>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 669
Score = 42.3 bits (95), Expect = 7e-05
Identities = 23/62 (37%), Positives = 37/62 (59%)
Frame = +3
Query: 537 PRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIETMFRYKL 716
P + +G GTMG G AI A++ AP VI ++GD++F +GME+ T+ ++ +
Sbjct: 511 PSSLVTSGGLGTMGFGLPAAIGASV----AAPKDIVIDIDGDASFSMTGMELATVRQFDI 566
Query: 717 PV 722
PV
Sbjct: 567 PV 568
>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 594
Score = 41.9 bits (94), Expect = 9e-05
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +3
Query: 588 GFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIETMFRYKLPVI 725
G+++ +AM AP +R I + GD +F +G EI M R+KLPV+
Sbjct: 422 GWSVPSAMGYAVAAPERRTIVMVGDGSFQLTGQEISQMIRHKLPVL 467
>SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 572
Score = 29.5 bits (63), Expect = 0.51
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 588 GFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIETMFRYKLPVI 725
G+++ +A AP + V+ GD +F + E+ M R LP+I
Sbjct: 426 GWSVPSAFGYAIGAPKRNVVVFVGDGSFQETVQEVSQMVRLNLPII 471
>SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 270
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 331 SKQQLVAGTETEQKANTEFVEAQA-SSTAVPLNYYTVFKTVQQGIPKDSII 480
S+Q T+ E+ ++T+ E Q SS +P+N + + QGIP++++I
Sbjct: 22 SRQTPSEFTKKEEDSSTKESELQTRSSPPLPVNTSLEWNMLNQGIPEEAMI 72
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 27.5 bits (58), Expect = 2.1
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +3
Query: 390 RGSSKQHCSTTELLHC--FQNSSTRHSKRFNHCQRRSEYHGYGRGLLLNNHPRHRLDAGT 563
R + + H + +E H + NS ++K ++H Q Y+ G + HPR R
Sbjct: 289 RSNRQNHGNFSEKRHYDRYGNSHPSYNK-YSHYQHGFNYNNSGNNRNESGHPRFRNSRRN 347
Query: 564 FGTMGVGPGF 593
+ G P +
Sbjct: 348 YNNQGAYPTY 357
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 233 QQQEIRITVHSDIRPFTEALVKRLSER 313
QQ ++V SD+ PFT L+K++S+R
Sbjct: 229 QQPLSDVSVPSDVLPFTIKLLKKISQR 255
>SPAC1002.04c |taf11||transcription factor TFIID complex subunit
Taf11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 205 RSKYLLKNFTTARNQNYSTLRH*TFYRSSCKKVVRK 312
R+KYLL++F + Q Y R +++ KK+ +
Sbjct: 92 RTKYLLESFDEEQMQRYEVFRRANLNKTNVKKLANQ 127
>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 25.8 bits (54), Expect = 6.3
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Frame = +3
Query: 390 RGSSKQHCSTTELLHCFQNSSTRHSK---RFNHCQRRSEYHGYGRGLLLNNHPRHRLDAG 560
R S K + +ELL CF N+ R + + GY LL+ N R + +A
Sbjct: 103 RASRKCYDFASELLDCFPNAEFRKRTGDIEVHEIAEAAAKRGY-TDLLVLNEDRKKTNAL 161
Query: 561 TFGTMGVGPGF 593
T + GP F
Sbjct: 162 TLVHLPNGPSF 172
>SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 269 IRPFTEALVKRLSERKFSLQPQNNSWWQGLKQNKKQ 376
I+ F+EA V +L E + P N S + QN+K+
Sbjct: 56 IKGFSEAKVDKLKEAASKMCPANFSTAMEISQNRKK 91
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,078,182
Number of Sequences: 5004
Number of extensions: 62994
Number of successful extensions: 204
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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