Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0048
(727 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0047 + 17557087-17558350,17558396-17558475,17559115-175591... 91 1e-18
01_01_0417 - 3135502-3135672,3135759-3135947,3136037-3136154,313... 31 0.93
12_01_0413 + 3286897-3286990,3287269-3287432 29 2.8
10_07_0128 + 13195958-13196011,13196399-13196407,13197257-131973... 29 2.8
09_04_0588 - 18789971-18790000,18790334-18790507,18791470-187919... 29 2.8
05_05_0170 + 22913791-22914315,22914418-22914581,22914675-229153... 29 2.8
06_01_0087 + 695443-695655,696669-696983 29 3.8
04_03_0739 + 19180048-19182039 29 3.8
04_03_0737 - 19152942-19154930 29 3.8
03_02_0652 - 10188076-10188243,10188353-10188541,10188633-101887... 29 5.0
02_05_0153 - 26315923-26316024,26316173-26316267,26316737-263167... 29 5.0
01_06_0785 - 31985455-31988463 29 5.0
09_03_0088 - 12242020-12242941,12243467-12243550,12243591-12244438 28 6.6
04_03_0659 - 18453778-18453903,18453976-18454963,18455496-184562... 28 6.6
02_03_0380 + 18335903-18337837 28 6.6
12_02_0956 + 24776359-24779085 28 8.7
05_05_0010 - 21496089-21496487 28 8.7
>01_05_0047 +
17557087-17558350,17558396-17558475,17559115-17559149,
17559545-17559551,17560405-17560719
Length = 566
Score = 90.6 bits (215), Expect = 1e-18
Identities = 39/78 (50%), Positives = 55/78 (70%)
Frame = +3
Query: 9 ENTKLPFLPTPMGKGVVADESEYCVSTARTQALLKADVILLLGARMNWMLHFGQPPRYAP 188
+ T +PFLPTPMGKGVV D + AR+ A+ + DV L++GAR+NW+LHFG+PP+++
Sbjct: 236 DTTGIPFLPTPMGKGVVPDTHPLSATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSK 295
Query: 189 DVKIIQVEISPEEFHNSK 242
DVK I V++ EE K
Sbjct: 296 DVKFILVDVCEEEIELRK 313
Score = 37.9 bits (84), Expect = 0.008
Identities = 26/62 (41%), Positives = 32/62 (51%)
Frame = +3
Query: 510 GRGLLLNNHPRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGME 689
GR +L+ N PR RLDA A+A P + V+ VEGDS FGFS ME
Sbjct: 406 GRAVLVQNEPRTRLDAA-----------AVAE--------PDRLVVAVEGDSGFGFSAME 446
Query: 690 IE 695
+E
Sbjct: 447 VE 448
Score = 35.5 bits (78), Expect = 0.043
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Frame = +1
Query: 388 VEAQASSTAVPLNYYTVFKTVQQGIPKDS----IIVSEGANTMDM 510
+EAQ + VP N+ T + ++ I + ++VSEGANTMD+
Sbjct: 361 MEAQLAKDVVPFNFLTPLRIIRDAILAEGNPAPVVVSEGANTMDV 405
>01_01_0417 -
3135502-3135672,3135759-3135947,3136037-3136154,
3136398-3137048,3137146-3137309,3138598-3139098
Length = 597
Score = 31.1 bits (67), Expect = 0.93
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 588 GFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIETMFRY 710
G+++ A + A KRVI GD +F + E+ TM R+
Sbjct: 450 GWSVGATLGYAKAAKDKRVIACIGDGSFQVTAQEVSTMLRW 490
>12_01_0413 + 3286897-3286990,3287269-3287432
Length = 85
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Frame = -3
Query: 635 TRCIVSAPHC---CCNSEARSYPHSAKCTSI 552
T C V PHC CN++ ++ S KC S+
Sbjct: 35 TECTVETPHCTMDSCNAKCKAEATSRKCNSL 65
>10_07_0128 +
13195958-13196011,13196399-13196407,13197257-13197337,
13197375-13197856,13198287-13198323,13198425-13198529
Length = 255
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 525 LNNHPRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGKRVICV 653
L N R + D GT+G ++I A +W DY K VI +
Sbjct: 62 LQNDIRVKPDLDALGTLGDAGWYSIRAILWAVDYELPKTVIAL 104
>09_04_0588 -
18789971-18790000,18790334-18790507,18791470-18791954,
18792912-18793266
Length = 347
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 477 HCQRRSEYHGYGRGLLLN-NHPRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGKRVIC 650
H QR + G G G +++ +HP HRL F + + M C++Y GKR +C
Sbjct: 32 HQQRGEDGGGGGDGEMVHFSHPEHRLARFDFPYLFM--------CMGCKEYGAGKRFMC 82
>05_05_0170 +
22913791-22914315,22914418-22914581,22914675-22915325,
22915425-22915542,22915635-22915823,22915948-22916118
Length = 605
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 588 GFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIETMFR 707
G+++ A + A KRVI GD +F + ++ TM R
Sbjct: 458 GWSVGATLGYAQAAKDKRVISCIGDGSFQMTAQDVSTMLR 497
>06_01_0087 + 695443-695655,696669-696983
Length = 175
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 503 WIWPRFIAQQSSETQARCWYIWHYGGRTW-LRYC 601
WI PRF + +E +AR + H GG++W YC
Sbjct: 72 WIPPRF-QHRLAEPEARTAAVLHSGGKSWATSYC 104
>04_03_0739 + 19180048-19182039
Length = 663
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +3
Query: 102 ALLKADVILLLGARMNWMLHFGQPPRYAPDVKIIQVEISPEEFHNSKK 245
A+ AD++L LG R + + G+ +A KI+ V+I P E +K+
Sbjct: 348 AVDNADLLLALGVRFDDRVT-GKVEAFASRAKIVHVDIDPSELGKNKQ 394
>04_03_0737 - 19152942-19154930
Length = 662
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +3
Query: 102 ALLKADVILLLGARMNWMLHFGQPPRYAPDVKIIQVEISPEEFHNSKK 245
A+ AD++L LG R + + G+ +A KI+ V+I P E +K+
Sbjct: 352 AVDNADLLLALGVRFDDRVT-GKVEAFASRAKIVHVDIDPSELGKNKQ 398
>03_02_0652 -
10188076-10188243,10188353-10188541,10188633-10188750,
10188841-10189491,10189870-10190033,10190137-10190574
Length = 575
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 588 GFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIETMFR 707
G+++ A + A KRVI GD +F + ++ TM R
Sbjct: 429 GWSVGALLGYAQGAKDKRVIACIGDGSFQVTAQDVSTMIR 468
>02_05_0153 -
26315923-26316024,26316173-26316267,26316737-26316784,
26316925-26317045,26317682-26317736,26317820-26317935,
26318479-26318547,26318909-26319018,26319985-26320069
Length = 266
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +2
Query: 149 LDAALWTTAEICARR*NYSGRNIS*RISQQQEIRITVHSDIRPFTEALVKRLSER-KFSL 325
L WT+AE+ + G+ +S +Q+++ + D+ P E ++RL R +
Sbjct: 21 LQVGKWTSAEVVTGSTAWIGKGLSCVCAQRRDSDARLSFDLTPVQEECLQRLQNRLEVQY 80
Query: 326 QPQNNSWWQGLK 361
N+ + LK
Sbjct: 81 DSSNSDHQEALK 92
>01_06_0785 - 31985455-31988463
Length = 1002
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 615 CRDYAPGKRVICVEGDSAFGFSGMEIETMFRY 710
CR GK + C+ G+S G + + +E +R+
Sbjct: 464 CRKILYGKGIACISGESGIGKTDLVLEYAYRF 495
>09_03_0088 - 12242020-12242941,12243467-12243550,12243591-12244438
Length = 617
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 103 ACVRAVDTQYSDSSATTPLP 44
AC+R VDT S ++ TPLP
Sbjct: 453 ACLRPVDTDTSSATTVTPLP 472
>04_03_0659 -
18453778-18453903,18453976-18454963,18455496-18456229,
18456292-18456360,18456528-18456605,18456703-18456789,
18456881-18456931,18457021-18457092,18457177-18457304,
18458194-18458275,18458705-18458754,18459043-18459096,
18459586-18459675,18459903-18459983,18460443-18460538,
18460960-18461022,18461313-18461402,18461630-18461698,
18462051-18462291
Length = 1082
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 277 FYRSSCKKVVRKEVLIATSKQQLVAGTETEQKANT-EFVEAQASSTAVPLNYYTVFKT 447
F++ KV+RKE +S + V GT + Q+ T E V+++ +S A+ + + T
Sbjct: 88 FHKKYTTKVIRKESRTDSSSTEQVIGTSSIQEMETNEQVKSKDTSKAIAERIHKEYTT 145
>02_03_0380 + 18335903-18337837
Length = 644
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +3
Query: 537 PRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIETMFRYKL 716
PR L + G MG F + AA PG V+ ++GD +F + E+ + L
Sbjct: 475 PRQWLSSAGLGAMG----FGLPAAAGASVANPGVTVVDIDGDGSFLMNIQELALIRIENL 530
Query: 717 PV 722
PV
Sbjct: 531 PV 532
>12_02_0956 + 24776359-24779085
Length = 908
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 329 PQNNSWWQGLKQNKKQTPNL 388
P +SW+ G K NK+ +PNL
Sbjct: 535 PLPSSWFAGRKSNKRMSPNL 554
>05_05_0010 - 21496089-21496487
Length = 132
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -1
Query: 193 TSGAYLGGCPKCSIQFILAPRSSMTSAFSRACVRAVDTQYSDSSATT-PLPIGVGK 29
+SG L GCP+C + +L S C V ++D++A P +G GK
Sbjct: 74 SSGMILAGCPRCMMYVML----SREDPKCPKCHSTVLLDFNDAAAAADPRQVGAGK 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,027,290
Number of Sequences: 37544
Number of extensions: 420832
Number of successful extensions: 1165
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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