Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0048
         (727 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59568| Best HMM Match : TPP_enzyme_C (HMM E-Value=3.6e-34)          60   2e-09
SB_16464| Best HMM Match : Clathrin (HMM E-Value=1.6)                  30   2.2  
SB_903| Best HMM Match : DUF1328 (HMM E-Value=2.4)                     29   2.9  
SB_57248| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_49780| Best HMM Match : 7tm_1 (HMM E-Value=0.12)                    29   3.8  
SB_12834| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_27564| Best HMM Match : IPT (HMM E-Value=8.6)                       28   6.7  
SB_3484| Best HMM Match : Ribosomal_L17 (HMM E-Value=2.4)              28   6.7  
SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_11767| Best HMM Match : Kinesin (HMM E-Value=0)                     28   8.9  
SB_25690| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_59568| Best HMM Match : TPP_enzyme_C (HMM E-Value=3.6e-34)
          Length = 521

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 62/234 (26%), Positives = 98/234 (41%), Gaps = 6/234 (2%)
 Frame = +3

Query: 42  MGKGVVADESEYCVSTARTQALLKADVILLLGARMNWMLHFGQPPRYAPDVKIIQVEISP 221
           M +G++   S+  +   R  AL +ADV++L G   ++ L +G+        KII V  S 
Sbjct: 209 MSRGMLGRNSKLHIRQRRRDALKEADVVILAGTVCDFRLSYGRVLNRKS--KIIAVNRSH 266

Query: 222 EEFHNSKKSEXXXXXXXXXXXXXXXXGCP-----KG-SSHCNLKTTVGGRD*NRTKSKHR 383
            + +  K S+                 C      KG  S  +   ++  RD  +      
Sbjct: 267 SQLY--KNSDMFWKPTVAIQGDPASFLCSLCEVLKGYESPKDWVESLKDRDLQKESDNRL 324

Query: 384 ICRGSSKQHCSTTELLHCFQNSSTRHSKRFNHCQRRSEYHGYGRGLLLNNHPRHRLDAGT 563
                  QH +  +LL+  +   ++ S          ++ G    +L    P   LD G 
Sbjct: 325 KAEEVPAQHLNPMKLLNIVEQVMSKDSVIVAD---GGDFVGTAAYILRPRAPLSWLDPGA 381

Query: 564 FGTMGVGPGFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIETMFRYKLPVI 725
           FGT+GVG GFA+ A + CR   P   V  + GD + G+S  E +T  R+K PVI
Sbjct: 382 FGTLGVGGGFALGAKL-CR---PDSDVWVMYGDGSLGYSIAEFDTFVRHKTPVI 431


>SB_16464| Best HMM Match : Clathrin (HMM E-Value=1.6)
          Length = 482

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +3

Query: 372 SKHRICRGSSKQHCSTTELLHCFQNSSTRHSKRFNHCQRRSEYHGYGR 515
           SKH + R      CS+       Q  S R S +F   +RRS    +G+
Sbjct: 27  SKHDMGRSPKSSRCSSVAWSDIEQGCSPRLSSKFRGLERRSSVENFGQ 74


>SB_903| Best HMM Match : DUF1328 (HMM E-Value=2.4)
          Length = 350

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
 Frame = +1

Query: 229 FTTARNQNYSTL-RH*TFYRSSCKKVVRKEVLIATSKQQLVAGTETEQKA 375
           F+   +Q++ST+ +  TF+R + KKVV  E L+  S+  L+   +TE+ A
Sbjct: 80  FSANLSQSFSTIAQSGTFFRETFKKVVTVE-LLKPSETALIVFEKTEESA 128


>SB_57248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 281

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +1

Query: 229 FTTARNQNYSTL-RH*TFYRSSCKKVVRKEVLIATSKQQLVAGTETEQKA 375
           F+   +Q +ST+ +  TF+R + KKVV  E L+  S+  L+   +TE+ A
Sbjct: 40  FSANLSQGFSTIAQSETFFRETFKKVVTLE-LLKPSETALIVFEKTEESA 88


>SB_49780| Best HMM Match : 7tm_1 (HMM E-Value=0.12)
          Length = 345

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +1

Query: 289 SCKKVVRKEVLIATSK-QQLVAGTETEQKANTEFVEAQASSTAVP 420
           +CK++  +EV +A    Q++   +   +KAN E +EA AS TA P
Sbjct: 161 TCKRIPEREVEVAIEIIQRMQKDSSNGEKAN-EGIEANASGTARP 204


>SB_12834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1261

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -1

Query: 454  VELF*KQCSSSV-VLQCCLLEPLQIRCLLFVLFQSLPPT 341
            ++L+ +Q SS++ +  CC   P+   CL++ LF SL  T
Sbjct: 1016 LKLYRRQISSNMFIAACCFPLPVGFFCLVYCLFMSLRGT 1054


>SB_27564| Best HMM Match : IPT (HMM E-Value=8.6)
          Length = 220

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 379 TEFVEAQASSTAVPLNYYTV-FKTVQQGIPKDSIIVSEGANTM 504
           T F+EAQ S     ++Y    ++  QQG P   ++ SEG  ++
Sbjct: 35  TGFLEAQLSVIGKTVSYALASWRPTQQGPPSPPVVASEGTESL 77


>SB_3484| Best HMM Match : Ribosomal_L17 (HMM E-Value=2.4)
          Length = 103

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 108 VELVYAQLIHSTQIRQLPLLYPLVWARKVI 19
           +E  Y Q++ S   R +P+LYPL+  R +I
Sbjct: 74  IEGSYVQMVESAGARVVPILYPLMVIRLLI 103


>SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1089

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 417  TTELLHCFQNSSTRHSKRFNHCQRRSE 497
            TT +L+CF  S  ++ +  NH  R+ E
Sbjct: 1021 TTRMLYCFSESPAKNLRDINHMLRQGE 1047


>SB_11767| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 1230

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
 Frame = +3

Query: 387 CRGSSKQHCSTTELLHCFQNSSTRHSKRFN--HCQRR---SEYHGYGRGL 521
           C  +S  HC+ T + HC   +ST H    +  HC  +   + YH   R L
Sbjct: 174 CTATSTAHCTATSIAHC-TTTSTAHCTATSTAHCTAKIYCALYHDIYRAL 222


>SB_25690| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 430 YTVFKTVQQGIPKDSIIVSEGANTMDMAEV 519
           +T+F  V+Q +PK  ++     +T DMAEV
Sbjct: 9   FTIFGGVRQTVPKTFVLFVPRDSTADMAEV 38


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,334,093
Number of Sequences: 59808
Number of extensions: 494128
Number of successful extensions: 1276
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1271
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)