Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0048
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.9  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   6.8  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   6.8  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   6.8  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   6.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.0  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -3

Query: 212 FDLNN-FNVGRISRRLSKVQ 156
           +DL N FN+ R  R+LSK Q
Sbjct: 14  YDLENEFNINRPRRKLSKKQ 33


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 220 LKNFTTARNQNYSTLRH*TFYRSSCKKV 303
           L N T   N NY    +   Y ++CKK+
Sbjct: 85  LSNRTIHNNNNYKYNYNNNNYNNNCKKL 112


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 220 LKNFTTARNQNYSTLRH*TFYRSSCKKV 303
           L N T   N NY    +   Y ++CKK+
Sbjct: 85  LSNKTIHNNNNYKYNYNNNNYNNNCKKL 112


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 220 LKNFTTARNQNYSTLRH*TFYRSSCKKV 303
           L N T   N NY    +   Y ++CKK+
Sbjct: 85  LSNKTIHNNNNYKYNYNNNNYNNNCKKL 112


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 220 LKNFTTARNQNYSTLRH*TFYRSSCKKV 303
           L N T   N NY    +   Y ++CKK+
Sbjct: 85  LSNKTIHNNNNYKYNYNNNNYNNNCKKL 112


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = +2

Query: 554 CWYIWHYGGRTWLRYCSSNVV 616
           CW +  YG R +  + + +V+
Sbjct: 828 CWEVMSYGERPYWNWSNQDVI 848


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 431 TLFSKQFNKAFQKIQS 478
           T+F+ +F KAF K+ S
Sbjct: 678 TVFNPEFRKAFHKLVS 693


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 123 ILLLGARMNWMLHFGQP 173
           I LLG+R++W  H   P
Sbjct: 679 IWLLGSRLDWEDHASSP 695


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,317
Number of Sequences: 438
Number of extensions: 4648
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)