Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0048
(727 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g17380.1 68418.m02038 pyruvate decarboxylase family protein s... 91 5e-19
At1g54300.1 68414.m06190 hypothetical protein 33 0.19
At3g48560.1 68416.m05302 acetolactate synthase, chloroplast / ac... 32 0.45
At5g54960.1 68418.m06845 pyruvate decarboxylase, putative strong... 30 1.8
At5g01320.1 68418.m00044 pyruvate decarboxylase, putative strong... 30 1.8
At5g01330.1 68418.m00045 pyruvate decarboxylase, putative strong... 29 2.4
At4g33070.1 68417.m04711 pyruvate decarboxylase, putative strong... 29 2.4
At3g07870.1 68416.m00962 F-box family protein contains F-box dom... 29 3.1
At2g35110.1 68415.m04307 HEM protein-related weak similarity to ... 28 7.2
At2g17440.1 68415.m02012 leucine-rich repeat family protein cont... 27 9.6
>At5g17380.1 68418.m02038 pyruvate decarboxylase family protein
similar to 2-hydroxyphytanoyl-CoA lyase [Homo sapiens]
GI:6273457; contains InterPro entry IPR000399: Pyruvate
decarboxylase
Length = 572
Score = 91.5 bits (217), Expect = 5e-19
Identities = 40/78 (51%), Positives = 56/78 (71%)
Frame = +3
Query: 9 ENTKLPFLPTPMGKGVVADESEYCVSTARTQALLKADVILLLGARMNWMLHFGQPPRYAP 188
E T +PFLPTPMGKG++ D E+ + AR+ A+ K DV L++GAR+NW+LHFG+ P++
Sbjct: 241 EITGIPFLPTPMGKGLLPDTHEFSATAARSLAIGKCDVALVVGARLNWLLHFGESPKWDK 300
Query: 189 DVKIIQVEISPEEFHNSK 242
DVK I V++S EE K
Sbjct: 301 DVKFILVDVSEEEIELRK 318
Score = 85.0 bits (201), Expect = 5e-17
Identities = 41/72 (56%), Positives = 52/72 (72%)
Frame = +3
Query: 510 GRGLLLNNHPRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGME 689
GR +L+ PR RLDAGT+GTMGVG G+ IAAA+ +P + V+ VEGDS FGFS ME
Sbjct: 411 GRSVLVQKEPRTRLDAGTWGTMGVGLGYCIAAAV----ASPDRLVVAVEGDSGFGFSAME 466
Query: 690 IETMFRYKLPVI 725
+ET+ RY L V+
Sbjct: 467 VETLVRYNLAVV 478
Score = 37.1 bits (82), Expect = 0.012
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +1
Query: 346 VAGTETEQKANTEFVEAQASSTAVPLNYYTVFKTVQQGI----PKDSIIVSEGANTMDM 510
V + K N E +E Q + VP N+ T + ++ I ++VSEGANTMD+
Sbjct: 352 VESISKKAKENGEKMEIQLAKDVVPFNFLTPMRIIRDAILAVEGPSPVVVSEGANTMDV 410
>At1g54300.1 68414.m06190 hypothetical protein
Length = 314
Score = 33.1 bits (72), Expect = 0.19
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +3
Query: 474 NHCQRRSEYHGYGRGLLLNNHPRHRLDAGTFGTMGVGPG-FAIAAAMWCRD-YAPGKRVI 647
N+ R S H + G +NN P+H G G +GVG G F++A W R+ Y+P V
Sbjct: 163 NNSSRNS--HSHTVGFNVNNGPQHHFSQG-IGGVGVGEGNFSMANGGWQRNSYSP---VN 216
Query: 648 CVEGDSAFGFSGME 689
+ ++A F GM+
Sbjct: 217 SLNYNTANEFFGMQ 230
>At3g48560.1 68416.m05302 acetolactate synthase, chloroplast /
acetohydroxy-acid synthase (ALS) nearly identical to
SP|P17597 Acetolactate synthase, chloroplast precursor
(EC 2.2.1.6, formerly EC 4.1.3.18) (Acetohydroxy-acid
synthase) (ALS) {Arabidopsis thaliana}
Length = 670
Score = 31.9 bits (69), Expect = 0.45
Identities = 21/62 (33%), Positives = 31/62 (50%)
Frame = +3
Query: 537 PRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIETMFRYKL 716
PR L +G G MG G AI A++ P V+ ++GD +F + E+ T+ L
Sbjct: 501 PRQWLSSGGLGAMGFGLPAAIGASV----ANPDAIVVDIDGDGSFIMNVQELATIRVENL 556
Query: 717 PV 722
PV
Sbjct: 557 PV 558
>At5g54960.1 68418.m06845 pyruvate decarboxylase, putative strong
similarity to pyruvate decarboxylase 1 [Vitis vinifera]
GI:10732644; contains InterPro entry IPR000399: Pyruvate
decarboxylase
Length = 607
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 588 GFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIETMFR 707
G+++ A + P +RVI GD +F + ++ TM R
Sbjct: 460 GWSVGATLGYAQAMPNRRVIACIGDGSFQVTAQDVSTMIR 499
>At5g01320.1 68418.m00044 pyruvate decarboxylase, putative strong
similarity to pyruvate decarboxylase 1 [Vitis vinifera]
GI:10732644; contains InterPro entry IPR000399: Pyruvate
decarboxylase
Length = 603
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 588 GFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIETMFR 707
G+++ A + P KRV+ GD +F + +I TM R
Sbjct: 456 GWSVGATLGYAQATPEKRVLSFIGDGSFQVTAQDISTMIR 495
>At5g01330.1 68418.m00045 pyruvate decarboxylase, putative strong
similarity to pyruvate decarboxylase 1 [Vitis vinifera]
GI:10732644; contains InterPro entry IPR000399: Pyruvate
decarboxylase
Length = 592
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 588 GFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIETMFR 707
G+++ A + P KRV+ GD +F + ++ TM R
Sbjct: 445 GWSVGATLGYAQATPEKRVLSFIGDGSFQVTAQDVSTMIR 484
>At4g33070.1 68417.m04711 pyruvate decarboxylase, putative strong
similarity to SP|P51846 Pyruvate decarboxylase isozyme 2
(EC 4.1.1.1) (PDC) {Nicotiana tabacum}; contains
InterPro entry IPR000399: Pyruvate decarboxylase
Length = 607
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 588 GFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIETMFR 707
G+++ A + +P KRV+ GD +F + +I TM R
Sbjct: 460 GWSVGATLGYAQASPEKRVLAFIGDGSFQVTVQDISTMLR 499
>At3g07870.1 68416.m00962 F-box family protein contains F-box domain
Pfam:PF00646
Length = 417
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 138 ARMNWMLHF-GQPPRYAPDVKIIQVEISPEEFHNSKKSE 251
A +N LHF +P R+ PD K + ++ EEF K +
Sbjct: 241 ALVNGRLHFVTRPRRHVPDRKFVSFDLEDEEFKEIPKPD 279
>At2g35110.1 68415.m04307 HEM protein-related weak similarity to
Membrane-associated protein Hem (Dhem-2)
(Swiss-Prot:P55162) [Drosophila melanogaster]; weak
similarity to Nck-associated protein 1 (NAP 1) (p125Nap1)
(Membrane-associated protein HEM-2) (Swiss-Prot:P55161)
[Rattus norvegicus]
Length = 1339
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -1
Query: 160 CSIQFILAPRSSMTSAFSRACVRAVDTQYSDSSATTPL 47
C I L PRSS+ S +R++ TQY ++ +TPL
Sbjct: 1179 CEISPYL-PRSSLESHVPYTILRSIYTQYYSNTPSTPL 1215
>At2g17440.1 68415.m02012 leucine-rich repeat family protein
contains Pfam PF00560: Leucine Rich Repeats
Length = 526
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +1
Query: 304 VRKEVLIATSKQQLVAGTETEQKANTEFVE--AQASSTAVPLNYYTVFKTVQQGI 462
+R E+ + L+ E E + E ++ + SS+ VPL + VFK +++ +
Sbjct: 20 LRPEIDDVETATSLIQNVEKEDRNRLEAIDKLVKTSSSEVPLELFNVFKEMKKSL 74
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,116,031
Number of Sequences: 28952
Number of extensions: 336220
Number of successful extensions: 900
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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