Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0046
         (817 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    27   0.18 
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    22   6.7  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    22   6.7  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 22/106 (20%), Positives = 47/106 (44%)
 Frame = +2

Query: 77  RQRLKEVKPGQCIKVQDMYIIPELPLMIKKTGPNVALKPSDFTINRLTGLTAAFAFQNRR 256
           RQ+ K+    Q ++          P++ K +   V++  +  T +  +  +   A  + R
Sbjct: 125 RQQQKQHNQQQSVEKSSKLKNKSAPILTKTSPTPVSINNNTSTSSSASSPSVTAA-PHLR 183

Query: 257 ASPRYFQAKLTPSAWSGTTRSN*NAAYTYRRSAALSTSLKYSGFTL 394
            SP Y + +L  S  S ++ +  +A YT   ++++ +      FTL
Sbjct: 184 DSPNYIKPQLHVSTGSTSSPTIASATYTNSANSSIWSPASIDSFTL 229


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 385 VYPLVCALKKYQMKKLPLELVIKAGKI 465
           V  L+ A  KYQ   L L+L  + GKI
Sbjct: 180 VSALIKAFSKYQFVVLVLQLQHRFGKI 206


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 385 VYPLVCALKKYQMKKLPLELVIKAGKI 465
           V  L+ A  KYQ   L L+L  + GKI
Sbjct: 180 VSALIKAFSKYQFVVLVLQLQHRFGKI 206


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,801
Number of Sequences: 336
Number of extensions: 4492
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22310335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)