Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0046
(817 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 1.8
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni... 28 1.8
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 27 2.4
SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|... 27 2.4
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 27 4.2
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc... 26 5.6
SPCC1739.09c |cox13||cytochrome c oxidase subunit VIa|Schizosacc... 26 5.6
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 25 9.7
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar... 25 9.7
>SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 178
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Frame = -2
Query: 231 AVNPVKRFIVKSLGLSATFGPVFLIINGNS-------GMMYISCT 118
A+ +K+F + SLGL+ PV L+++ M++++CT
Sbjct: 33 AIGNIKKFSIGSLGLTYMISPVMLLLDAGGLSLGTRMSMVFLACT 77
>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 367 FLKIFGVYPLVCALKKYQMKKLPLELVIKAGKIKNEKGERW 489
F+ I + + LK YQ K +PLE + K++ + E W
Sbjct: 315 FIAIMDIKDVRPVLKSYQGKNIPLEYARREEKLRTKLIEDW 355
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +1
Query: 175 ERGAQAKRFHNKSFDGINSCVRLPEPSRFPQIFSSEAHAIGLEWDNA 315
E A+RFH++S D VR S FP + + G N+
Sbjct: 503 EPSLDAERFHSRSVDASPKAVRRESRSFFPSLTRKRSKFFGSSQSNS 549
>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +2
Query: 431 YHWNS*LKPVRLRTRKANDGVGFAEKNAKLNIVWTMFPDTGSNNLSAILMNTP 589
Y W+ P +L+ A A K +K+ V +FP+ N A+ TP
Sbjct: 178 YFWSCFFSPSKLKITDAKPLAKVAAKASKIGTVVILFPEGVCTNGRALCQFTP 230
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -3
Query: 86 IVASNRRPWPIL*QHFLFPSGNQRI 12
+V ++ RP P+ QH+LFPSG+ I
Sbjct: 365 VVYTDFRPTPL--QHYLFPSGSDGI 387
>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 270 YLGEARRFWKANAAVNPVKRFIVKSLGLSATFGPVFL 160
++ RF + + NP F V SLGL + F +FL
Sbjct: 96 FMEAIERFIEPPSVSNPTLMFFVGSLGLLSNFVGIFL 132
>SPCC1739.09c |cox13||cytochrome c oxidase subunit
VIa|Schizosaccharomyces pombe|chr 3|||Manual
Length = 130
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 496 FCREKRQAKHCLDYVPRYGFK*LVCHFDEYP 588
+C+ + AKH D P Y F+ L F +YP
Sbjct: 80 YCKHQEHAKHVEDTDPGYSFENL--RFKKYP 108
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 25.4 bits (53), Expect = 9.7
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Frame = -1
Query: 427 FSFGISLKRKREGKPRIF*GSAQRR*PPISI--SGILIRPRCPTPGRWRELRLKISG-GS 257
FS +LK KP +F GS+QRR +I S I + PG EL K G GS
Sbjct: 439 FSRTNALKTLYGSKPHVFSGSSQRRATGKNIHESAIALFSLHDVPGLMEELIYKSRGRGS 498
Query: 256 ATVLEGER 233
G +
Sbjct: 499 PKGFRGSQ 506
>SPAC23H3.03c |||nitrogen permease regulator
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/61 (21%), Positives = 29/61 (47%)
Frame = +1
Query: 232 CVRLPEPSRFPQIFSSEAHAIGLEWDNAVELKCRLYLSAVSGAEHFLKIFGVYPLVCALK 411
C+ + + +F I++ +A L D + +C Y+S S + ++ L C+L+
Sbjct: 252 CLIIADIFQFHNIYAMTTNAPNLLQDPDFQRECTAYVSTNSSNAKNVTFATIFKLYCSLR 311
Query: 412 K 414
+
Sbjct: 312 Q 312
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,463,103
Number of Sequences: 5004
Number of extensions: 75670
Number of successful extensions: 195
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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