Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0046
         (817 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1605 - 28166338-28166418,28166496-28166567,28166655-281667...    30   1.9  
06_02_0040 + 10882897-10884744,10885568-10885666                       29   4.4  

>08_02_1605 -
           28166338-28166418,28166496-28166567,28166655-28166771,
           28166846-28166956,28167077-28167252,28167340-28167421,
           28167662-28167808,28167887-28168252,28168558-28168741,
           28169104-28169213,28169452-28169508,28169589-28169600,
           28169899-28169961,28170010-28170057,28170166-28170246,
           28170326-28170389,28170661-28170686,28170782-28170868,
           28170942-28170969,28171194-28171255,28171364-28171576,
           28171667-28171774,28171948-28172022,28172136-28172249,
           28172597-28172644,28172688-28172767,28172974-28173049,
           28173287-28173427,28173685-28173762,28175100-28175204,
           28177061-28177147,28177287-28178579
          Length = 1463

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
 Frame = +2

Query: 104 GQCIKVQDMYIIPELPLMIKKTGPNVALKPSDFTINRLTGLTAAFAFQNRRASPRYFQA- 280
           G  + +  +Y++ E  L++    P VA     FT+  L G   AFAF     S ++ QA 
Sbjct: 120 GATVLMVPVYVLAEPLLLLVGQDPEVARAAGRFTLYILPG---AFAFAVNFPSGKFLQAQ 176

Query: 281 -KLTPSAWSGTTRSN*NAAYTYRRSAALSTSL 373
            K+   AW G      +   TY   + L   L
Sbjct: 177 SKVGVLAWIGVAGLAFHVGITYLAVSVLGWGL 208


>06_02_0040 + 10882897-10884744,10885568-10885666
          Length = 648

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = -2

Query: 654 VLRLLLESRSQFQPLNKAFSSAGVFIKMADKLFEPVSGNIVQTMFSLAFFSAKPTPS 484
           +LR  L     F  L +  +S+ +F+ + D+L    +  +V    SLAFF+A P PS
Sbjct: 158 LLRRPLPPSPSFPRLLRWLASSFLFLLLLDRLGTATA--LVLLALSLAFFAASPKPS 212


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,838,536
Number of Sequences: 37544
Number of extensions: 476299
Number of successful extensions: 1122
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)