Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0046
(817 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF026204-7|AAB71247.1| 272|Caenorhabditis elegans Hypothetical ... 31 0.99
L15188-9|AAM22024.1| 618|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z66494-9|CAA91260.1| 502|Caenorhabditis elegans Hypothetical pr... 30 1.7
AC017117-1|AAF16618.1| 338|Caenorhabditis elegans Hypothetical ... 30 2.3
Z93395-5|CAE18034.1| 519|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z83112-6|CAE17883.1| 519|Caenorhabditis elegans Hypothetical pr... 28 7.0
U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase... 28 7.0
U10333-1|AAA50224.1| 859|Caenorhabditis elegans RNA polymerase ... 28 7.0
AJ277649-1|CAB90211.1| 917|Caenorhabditis elegans CHE-14 protei... 28 7.0
AF067618-5|AAC19198.2| 917|Caenorhabditis elegans Abnormal chem... 28 7.0
>AF026204-7|AAB71247.1| 272|Caenorhabditis elegans Hypothetical
protein C30E1.2 protein.
Length = 272
Score = 31.1 bits (67), Expect = 0.99
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = -2
Query: 603 AFSSAGVFIKMADKLFE--PVSGNIVQTMFSLAFFSAKPTPSFAFLVLNLTGFNHEFQW 433
AFSSA F+ +A +FE V G I++ +F++ FS+ F + +G E QW
Sbjct: 51 AFSSASQFLALAANIFELSGVPGFIIKILFAMLSFSSTAFFCFKYYFQRPSGI-QENQW 108
>L15188-9|AAM22024.1| 618|Caenorhabditis elegans Hypothetical
protein C14B9.2 protein.
Length = 618
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 104 GQCIKVQDMYIIPELPLMIKKTGPNVALKPSDFTIN 211
G C + Y+ EL +KKT PNV L D TIN
Sbjct: 530 GHCKSFESKYV--ELAQALKKTQPNVVLAKMDATIN 563
>Z66494-9|CAA91260.1| 502|Caenorhabditis elegans Hypothetical
protein C34C6.6a protein.
Length = 502
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/56 (33%), Positives = 24/56 (42%)
Frame = +2
Query: 209 NRLTGLTAAFAFQNRRASPRYFQAKLTPSAWSGTTRSN*NAAYTYRRSAALSTSLK 376
N L GL F N+R +P A L PS+ G +N R A S S+K
Sbjct: 13 NALVGLANTFGTSNQRVAPSNAAASLLPSSSMGEQMANEFLRQQARTMAPTSFSMK 68
>AC017117-1|AAF16618.1| 338|Caenorhabditis elegans Hypothetical
protein F43C11.8 protein.
Length = 338
Score = 29.9 bits (64), Expect = 2.3
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = +1
Query: 298 LEWDNAVELKCRLYLSAVSGAEHFLKIFGVYPLV--CALKKYQMKKLPLELVIKAGKIKN 471
++ NA L L S E + + V P V AL +M +L ++ V K +I N
Sbjct: 259 MKMSNADLLAVNSALEVSSENELWTEFADVEPEVFDAALIFPEMDRLVIQ-VTKVSRIDN 317
Query: 472 EKGERWRRFCREKRQAKHCLD 534
+ FCR +RQ C D
Sbjct: 318 NLSREFEEFCRARRQPASCSD 338
>Z93395-5|CAE18034.1| 519|Caenorhabditis elegans Hypothetical
protein ZC101.3 protein.
Length = 519
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 700 ILYVTF*KYNRLLLEKFRM*VLLMY*CIHYIYVCLSRKK 816
+LYV+ + N L + F + L Y IHYI CL K
Sbjct: 167 VLYVSMHETNSLSDDPFLIFTFLSYSMIHYISYCLEHLK 205
>Z83112-6|CAE17883.1| 519|Caenorhabditis elegans Hypothetical
protein ZC101.3 protein.
Length = 519
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 700 ILYVTF*KYNRLLLEKFRM*VLLMY*CIHYIYVCLSRKK 816
+LYV+ + N L + F + L Y IHYI CL K
Sbjct: 167 VLYVSMHETNSLSDDPFLIFTFLSYSMIHYISYCLEHLK 205
>U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase ii
(b) subunit protein2 protein.
Length = 1193
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +2
Query: 464 LRTRKANDGVGFAEKNAKLNIVWTMFPDTGSNNLSAILMNTPAELKALFRG--*NCDRDS 637
L T ++ + + F E A +N + + +G N +++MN A + LFR RD+
Sbjct: 764 LVTTRSMEYLRFNELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYRDN 823
Query: 638 NKSLNTTNDRFLYDNTQ 688
+L+ N+ + T+
Sbjct: 824 EANLDNANEELIEKPTR 840
>U10333-1|AAA50224.1| 859|Caenorhabditis elegans RNA polymerase II,
second largestsubunit protein.
Length = 859
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +2
Query: 464 LRTRKANDGVGFAEKNAKLNIVWTMFPDTGSNNLSAILMNTPAELKALFRG--*NCDRDS 637
L T ++ + + F E A +N + + +G N +++MN A + LFR RD+
Sbjct: 565 LVTTRSMEYLRFNELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYRDN 624
Query: 638 NKSLNTTNDRFLYDNTQ 688
+L+ N+ + T+
Sbjct: 625 EANLDNANEELIEKPTR 641
>AJ277649-1|CAB90211.1| 917|Caenorhabditis elegans CHE-14 protein
protein.
Length = 917
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 488 HRSPFSFLILPALITSSNGSFFIWYF 411
+R P FLILP LIT+ IW+F
Sbjct: 14 YRHPTLFLILPVLITTVIPFGLIWFF 39
>AF067618-5|AAC19198.2| 917|Caenorhabditis elegans Abnormal
chemotaxis protein 14 protein.
Length = 917
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 488 HRSPFSFLILPALITSSNGSFFIWYF 411
+R P FLILP LIT+ IW+F
Sbjct: 14 YRHPTLFLILPVLITTVIPFGLIWFF 39
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,123,758
Number of Sequences: 27780
Number of extensions: 424414
Number of successful extensions: 981
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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