Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0046
         (817 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47360.1 68418.m05837 pentatricopeptide (PPR) repeat-containi...    30   1.6  
At1g06380.1 68414.m00674 ribosomal protein-related similar to PB...    30   2.1  
At2g39750.1 68415.m04881 dehydration-responsive family protein s...    29   2.8  
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P...    28   6.4  
At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase (AT...    28   8.5  
At4g16250.1 68417.m02465 phytochrome D (PHYD) nearly identical t...    28   8.5  
At2g01950.1 68415.m00130 leucine-rich repeat transmembrane prote...    28   8.5  
At1g49110.1 68414.m05506 hypothetical protein                          28   8.5  

>At5g47360.1 68418.m05837 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 477

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 251 RRASPRYFQAKLTPSAWSGTTRSN*NAAYTYRRS 352
           RR  P  FQ+ L    W+GT  S+ ++AY Y ++
Sbjct: 68  RRCDPNQFQSGLRFFIWAGTLSSHRHSAYMYTKA 101


>At1g06380.1 68414.m00674 ribosomal protein-related similar to PBK1
           protein (GI:3668141) {Homo sapiens}; weakly similar to
           60S ribosomal protein L10a. (SP:Q963B6) [Fall armyworm]
           {Spodoptera frugiperda}
          Length = 254

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +1

Query: 403 ALKKYQMKKLPLELVIKAGKIKNE--KGERWRRF 498
           ALKK + +K+P+  VIK  K+K++  K E  +RF
Sbjct: 106 ALKKIEAEKIPITTVIKVSKLKSDLRKLEEEKRF 139


>At2g39750.1 68415.m04881 dehydration-responsive family protein
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 694

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 26/82 (31%), Positives = 40/82 (48%)
 Frame = +1

Query: 301 EWDNAVELKCRLYLSAVSGAEHFLKIFGVYPLVCALKKYQMKKLPLELVIKAGKIKNEKG 480
           +W N  E+         S A   +K FG+ P   ++++Y +  L    VIK  K   E+G
Sbjct: 152 DWGNQTEI-VEAKSDGDSKARVRIKKFGMCPE--SMREY-IPCLDNTDVIKKLK-STERG 206

Query: 481 ERWRRFCREKRQAKHCLDYVPR 546
           ER+ R C EK +  +CL   P+
Sbjct: 207 ERFERHCPEKGKGLNCLVPPPK 228


>At3g11830.1 68416.m01450 chaperonin, putative similar to
           SWISS-PROT:P80313 T-complex protein 1, eta subunit
           (TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 557

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/60 (26%), Positives = 31/60 (51%)
 Frame = +1

Query: 226 NSCVRLPEPSRFPQIFSSEAHAIGLEWDNAVELKCRLYLSAVSGAEHFLKIFGVYPLVCA 405
           N+ +RL +PS++  I  +E + I  + D  VE   ++ LS ++  +   + F    + CA
Sbjct: 255 NAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVESGAKVVLSRLAIGDLATQYFADRDIFCA 314


>At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase (ATHIM)
            identical to SP|P34881 DNA (cytosine-5)-methyltransferase
            AthI (EC 2.1.1.37) {Arabidopsis thaliana}
          Length = 1534

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 690  LHSYFICNFLEI*PSASRKI*NVGTIDV 773
            L +Y +C  LEI P  SRK  ++G+ DV
Sbjct: 943  LRAYVVCQLLEIVPKESRKA-DLGSFDV 969


>At4g16250.1 68417.m02465 phytochrome D (PHYD) nearly identical to
           SP|P42497 Phytochrome D {Arabidopsis thaliana}
          Length = 1164

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +1

Query: 235 VRLPEPSRFPQIFSSEAHAIGLEWDNAVELKCRLYLSAVSGAEHFLKIFGVYPLVCALK 411
           +  P P   P IF+++ +   LEW+ A+E       S V G     ++FG Y   C LK
Sbjct: 795 IHSPNPL-IPPIFAADENTCCLEWNTAMEKLTGWPRSEVIGKLLVREVFGSY---CRLK 849


>At2g01950.1 68415.m00130 leucine-rich repeat transmembrane protein
           kinase, putative similar to brassinosteroid insensitive
           protein
          Length = 1143

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 198 SLGLSATFGPVFLIINGNSGMMYISCTLMHCPGLTSFN 85
           ++ LS+     +L  +GNS   YIS +L++C  L S N
Sbjct: 197 TIPLSSCVSMTYLDFSGNSISGYISDSLINCTNLKSLN 234


>At1g49110.1 68414.m05506 hypothetical protein
          Length = 212

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +2

Query: 5   VYKYADFLKEKENVAIILAKAYDLRQRLKEVK 100
           +YKY + L E++ V+  L +A +LR  LKE++
Sbjct: 137 LYKYVEGLIERKTVSFALREADNLRAVLKEME 168


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,803,568
Number of Sequences: 28952
Number of extensions: 387264
Number of successful extensions: 872
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)