Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0044
         (495 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    27   1.6  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    25   6.3  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   8.3  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   8.3  

>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +2

Query: 35  IHHNGENLKGKRDRNRSPLRQKLVFYHQRLLNTKTE 142
           IH     L GK DRN  P+ +  V Y  R+LN   E
Sbjct: 524 IHQTHLELHGK-DRNTPPMAKTFVTYLHRILNAIKE 558


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 364 VFYCSWSQSHYGINLTFFLLAGLV 435
           +F+ + +  HYG+N TF  L  LV
Sbjct: 454 IFFLNLAFHHYGVNATFKALEQLV 477


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 200  QCTRVAFAPNRYASSSVLCFQFWYLVV 120
            QC  + FA N+    SVL F +  L+V
Sbjct: 1526 QCLLITFAQNKLTVHSVLTFDYIKLMV 1552


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +2

Query: 29  AQIHHNGENLKGKRDRNRSPLRQKLVFYHQRLLNT--KTENTVLKKTRIDLVQRLHAYIA 202
           AQ++   E+L  K   N+    QK V   Q+  N   KTE   L+K+ +  +QR    + 
Sbjct: 670 AQVNLGAEDLIAKL--NKEVEDQKDVILSQKRTNETLKTEIDALQKSHVTQIQRSEVELR 727

Query: 203 KTY 211
           + Y
Sbjct: 728 ELY 730


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,128,913
Number of Sequences: 5004
Number of extensions: 43752
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)