Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0044
         (495 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45528| Best HMM Match : TFR_dimer (HMM E-Value=6e-26)               30   1.2  
SB_47461| Best HMM Match : Ubie_methyltran (HMM E-Value=0.00024)       29   1.6  
SB_37884| Best HMM Match : Ubie_methyltran (HMM E-Value=0.00014)       29   1.6  
SB_22476| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)               27   6.4  
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_21997| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_1122| Best HMM Match : E-MAP-115 (HMM E-Value=0.8)                  27   8.5  
SB_28356| Best HMM Match : AAA_5 (HMM E-Value=0)                       27   8.5  

>SB_45528| Best HMM Match : TFR_dimer (HMM E-Value=6e-26)
          Length = 520

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 340 TGWRHPPAVFYCSWSQSHYGI 402
           TGWR    + +CSW    YG+
Sbjct: 191 TGWRPRRTIMFCSWGVEEYGL 211


>SB_47461| Best HMM Match : Ubie_methyltran (HMM E-Value=0.00024)
          Length = 307

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 53  NLKGKRDRN-RSPLRQKLVFYHQRLLNTKTENTVLKKTRIDLVQRLHAYIAKTYQKD 220
           NLK  ++R   SPL  K   YH R  N +T+      T I ++Q +   +A  + KD
Sbjct: 22  NLKSNKERKAESPLSIKRSKYHTRERNQQTQLKTQIDTFILILQNIQEKLATHHYKD 78


>SB_37884| Best HMM Match : Ubie_methyltran (HMM E-Value=0.00014)
          Length = 399

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 53  NLKGKRDRN-RSPLRQKLVFYHQRLLNTKTENTVLKKTRIDLVQRLHAYIAKTYQKD 220
           NLK  ++R   SPL  K   YH R  N +T+      T I ++Q +   +A  + KD
Sbjct: 70  NLKSNKERKAESPLSIKRSKYHTRERNQQTQLKTQIDTFILILQNIQEKLATHHYKD 126


>SB_22476| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)
          Length = 269

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 121 TTKYQN*KHSTEEDAYRFGAKATRVHCKNVPK 216
           +TK+ N  H T         K  R+H KN PK
Sbjct: 214 STKHANHAHKTRRLHSNHAHKTRRIHAKNAPK 245


>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1717

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -2

Query: 224 SYLFGTFLQCTRVAFAPNRYAS-SSVLCFQFWYLVVSDGRIQVF 96
           SYLF              R++S S  LC QFWY +  D  I V+
Sbjct: 826 SYLFLWSTDGRTTGNLTTRWSSRSQSLCLQFWYKLRGDSSIAVY 869


>SB_21997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 53  NLKGKRDRN-RSPLRQKLVFYHQRLLNTKTENTVLKKTRIDLVQRLHAYIAKT 208
           NLK  ++R   SPL  K   YH R  N +T+      T I ++Q   A I +T
Sbjct: 68  NLKSNKERKAESPLSIKRSKYHTRERNQQTQLKTQIDTFILILQAFLAVIHRT 120


>SB_1122| Best HMM Match : E-MAP-115 (HMM E-Value=0.8)
          Length = 976

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 53  NLKGKRDRN-RSPLRQKLVFYHQRLLNTKTENTVLKKTRIDLVQRLHAYIAKT 208
           NLK  ++R   SPL  K   YH R  N +T+      T I ++Q   A I +T
Sbjct: 219 NLKSNKERKAESPLSIKRSKYHTRERNQQTQLKTQIDTFILILQAFLAVIHRT 271


>SB_28356| Best HMM Match : AAA_5 (HMM E-Value=0)
          Length = 1737

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -3

Query: 337  HCTLAPI-LLSPKHYFTHSPRTLALDLGPLHFFRH 236
            H T+  I LL   HY+ H   T  L L   H++RH
Sbjct: 1271 HPTITDIPLLQTSHYYRHPLITDTLILQTSHYYRH 1305


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,853,755
Number of Sequences: 59808
Number of extensions: 326149
Number of successful extensions: 855
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)