Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0044
         (495 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.1  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   5.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.2  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   7.2  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +2

Query: 35   IHHNGENLKGKRDRNRSPLRQKLVFYHQRLLNTKT 139
            + ++G  + GK+  ++   +Q+ +    +LLN KT
Sbjct: 1218 VSNSGSVVLGKQQPSQQQTQQQPIILPSQLLNIKT 1252


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 310 SPKHYFTHSPRTLALDL 260
           SP HY   SP T  +DL
Sbjct: 42  SPDHYERFSPSTHLMDL 58


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 56  LKGKRDRNRSPLRQKLVFY 112
           ++   +RNRSP+R   V Y
Sbjct: 328 MRNDSERNRSPVRPATVQY 346


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +1

Query: 337 GTGWRHPPAVFYCSWSQSHYGINLTFFLLAGL 432
           GTG  H PA F  S+  S      T+   AGL
Sbjct: 397 GTGREHDPAKFPPSFRISRVAAYNTYGRNAGL 428


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,843
Number of Sequences: 438
Number of extensions: 3305
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)