Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0042
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    56   5e-09
SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces...    43   4e-05
SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    28   1.2  
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   6.3  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   6.3  
SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyc...    25   6.3  
SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1 |S...    25   8.4  
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    25   8.4  

>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 55.6 bits (128), Expect = 5e-09
 Identities = 27/61 (44%), Positives = 40/61 (65%)
 Frame = +1

Query: 379 QEYIILEDLTRRMLEPCIMDVKIGKRTWDPLATEEKIKNEQAKLRCASSSTVLHTRLPGL 558
           + YI++EDLT  M  PC++DVK+G R +  +ATE+K K  Q K    ++S VL  R+ G+
Sbjct: 713 ERYIVIEDLTSGMKRPCVLDVKMGTRQYGIMATEKK-KASQTKKCAMTTSRVLGVRICGM 771

Query: 559 Q 561
           Q
Sbjct: 772 Q 772


>SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 268

 Score = 42.7 bits (96), Expect = 4e-05
 Identities = 23/57 (40%), Positives = 34/57 (59%)
 Frame = +1

Query: 388 IILEDLTRRMLEPCIMDVKIGKRTWDPLATEEKIKNEQAKLRCASSSTVLHTRLPGL 558
           IILE++  +M  PC+MD+K+GK+ W   A  EK K   A  R  +S + L  R+ G+
Sbjct: 83  IILENILYQMETPCVMDIKLGKQLWADDAPLEKRKRLDAVSRSTTSGS-LGFRITGI 138


>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/48 (22%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -3

Query: 474 GERVPCSFANFNIHDARLEHPPRQIFQNNILLFVAIVSLFLAV-EILG 334
           G  V C +  F+ ++    + P +   ++++L++  ++LF+ + +ILG
Sbjct: 211 GTLVFCGYILFDTYNILHRYSPEEFIMSSLMLYLDFINLFIRILQILG 258


>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 439 VKIGKRTWDPLATEEKIKNEQAKLRCASSS 528
           +K  +R WDP+A++  I + QA  R A  S
Sbjct: 58  LKATRRFWDPMASQILISHFQAYARKARKS 87


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 538 AEPYCCLHSATWPARS*SSP 479
           A+ YC LHS T+P  S  SP
Sbjct: 371 AKCYCGLHSKTYPCSSLPSP 390


>SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
 Frame = +3

Query: 399 RSDEEDARALHHGC*NW--QKNMGPARHRGED*ERAGQVALC 518
           R D E    L H   NW  +K  GP  H G D +  G   +C
Sbjct: 215 RHDREGLLELTH---NWGTEKESGPVYHNGNDGDEKGYGHVC 253


>SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 445

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 298 SDPDLVELRKCTPKYFYCKK*TYNGYEQEYIILE-DLTRRML 420
           SD D++++R C    F  K  T N +  EY     ++T+R+L
Sbjct: 125 SDGDILDVRHCASFLFQQKYTTDNDFHHEYAGERFNITQRLL 166


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +2

Query: 83  IEKRNDELMTKPLALQKGLEIQAYDLQVAGHRKTEDTKYSGLLQCSNGTI 232
           + ++  +L  + LAL   +    Y + +    +TED  Y  L  C NG +
Sbjct: 54  LNEKQKKLQARELALHARVSSHPYIITLHRVLETEDAIYVVLQYCPNGDL 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,620,088
Number of Sequences: 5004
Number of extensions: 55655
Number of successful extensions: 137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)