Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0042
(596 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6441| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 7e-04
SB_35326| Best HMM Match : IPK (HMM E-Value=0) 41 7e-04
SB_31987| Best HMM Match : Troponin (HMM E-Value=7.1) 32 0.31
SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053) 31 0.93
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_3122| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_29438| Best HMM Match : TPR_2 (HMM E-Value=3.8e-36) 28 6.6
SB_54056| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_39886| Best HMM Match : PH (HMM E-Value=0.0007) 27 8.7
SB_8818| Best HMM Match : I-set (HMM E-Value=0) 27 8.7
>SB_6441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 59
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/59 (35%), Positives = 36/59 (61%)
Frame = +1
Query: 385 YIILEDLTRRMLEPCIMDVKIGKRTWDPLATEEKIKNEQAKLRCASSSTVLHTRLPGLQ 561
+I++E++ R + P IMD+K+G + EEK + ++AK AS+S L R+ G+Q
Sbjct: 2 FILMENIARDIAHPSIMDLKMGNEGHSDYSDEEKQERQRAKCD-ASTSKSLGVRIAGMQ 59
>SB_35326| Best HMM Match : IPK (HMM E-Value=0)
Length = 598
Score = 41.1 bits (92), Expect = 7e-04
Identities = 23/62 (37%), Positives = 35/62 (56%)
Frame = +1
Query: 376 EQEYIILEDLTRRMLEPCIMDVKIGKRTWDPLATEEKIKNEQAKLRCASSSTVLHTRLPG 555
+ E+I+LE++ + PCI+D+K+G R A EK AK+ ++S T L R G
Sbjct: 373 QSEFIVLENVAYQFSYPCILDLKMGTRQHGDDAPSEKRARIMAKVESSTSKT-LGVRACG 431
Query: 556 LQ 561
LQ
Sbjct: 432 LQ 433
>SB_31987| Best HMM Match : Troponin (HMM E-Value=7.1)
Length = 235
Score = 32.3 bits (70), Expect = 0.31
Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Frame = +2
Query: 32 KRTKVRRQRSIYQVHYN---IEKRNDELMTKPLALQKGLEIQAYD 157
+R+ V R RS Y V + ++K+N+ +++KP+ +GL++ YD
Sbjct: 54 QRSDVERLRSTYHVSESFLAMDKQNEGIVSKPITDPEGLDLTCYD 98
>SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)
Length = 1152
Score = 30.7 bits (66), Expect = 0.93
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 47 RRQRSIYQVHYNIEKRNDELMTKPLALQKGLEIQAYDLQVAG 172
R + YQ EK++D+ ++ A K E + YD+ VAG
Sbjct: 669 RLRELCYQTDIQCEKQSDDALSDAAAKNKFYETRCYDINVAG 710
>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3176
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/68 (29%), Positives = 27/68 (39%)
Frame = +1
Query: 103 ADDEAPCPAERA*NPSLRSAGSRPQKDRRHQVLRFIAVQ*RNNPETHNQRFQRREVDFYE 282
AD + C A NPS P R +VLR + Q ++ H V F +
Sbjct: 1996 ADKDTTCKVPTAPNPSFAEYLLGPTASRTEEVLRQVKEQQQSLKRPHEISVPSVAVPFKK 2055
Query: 283 RMWASSDP 306
R S+DP
Sbjct: 2056 RSRLSTDP 2063
>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3066
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 554 PGSLVCRTVLLLAQRNLACSFLIFSSVASGSHVLLPIL 441
P S +C +L L N AC LI + S +L+P+L
Sbjct: 2567 PSSSLCMAILDLYSDNSACGRLILELCNTLSQILVPLL 2604
>SB_3122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1246
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 373 YEQEYIILEDLTRRMLEPCIMDVKIGKRTWDPLATEEKIKN 495
Y+ + IL++L L+P +D I RT + TEE+ KN
Sbjct: 720 YKGVFSILDELGMPDLKPVFVDNFIQDRTLQYMGTEEEFKN 760
>SB_29438| Best HMM Match : TPR_2 (HMM E-Value=3.8e-36)
Length = 1021
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 236 SGLFRYCTAINLSTWCLRSFCGRLPADRRLG 144
+ L Y TA+ + C RS CGR+ A +G
Sbjct: 418 AALSDYNTALGIQPGCARSLCGRMRAHFAIG 448
>SB_54056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 58
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 379 QEYIILEDLTRRMLEPCIMDVKIGKRTW 462
QE + ++DL +++ + DVK KR W
Sbjct: 9 QEEVYVQDLENNVIQGYLKDVKANKRRW 36
>SB_39886| Best HMM Match : PH (HMM E-Value=0.0007)
Length = 597
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 379 QEYIILEDLTRRMLEPCIMDVKIGKRTW 462
QE + ++DL +++ + DVK KR W
Sbjct: 216 QEEVYVQDLENNVIQGYLKDVKANKRRW 243
>SB_8818| Best HMM Match : I-set (HMM E-Value=0)
Length = 2787
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +2
Query: 86 EKRNDELMTKPLA-LQ-KGLEIQAYDLQVAGHRKTEDTKYSGLLQCSNGTILKPIIKDS 256
EK ++ KPL+ LQ + + +++Q+AG+ K Y G + GTI K +++DS
Sbjct: 1731 EKAVKPVIVKPLSNLQVEEKSLTRFEVQIAGNPKPRVAWYHGTTKLIEGTIYK-MLEDS 1788
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,328,723
Number of Sequences: 59808
Number of extensions: 446941
Number of successful extensions: 1012
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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