Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0041
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    28   1.7  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    28   1.7  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    27   3.0  
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    26   6.9  
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    26   6.9  
SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase ...    25   9.2  
SPAC17H9.11 |||cofilin/tropomyosin family protein|Schizosaccharo...    25   9.2  
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    25   9.2  

>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 358  PKDFWLQESDAIEKYFKEEVGEDLPNEMWDELKS 459
            PK+ WL + DA E  +  +V +D+  EM +E +S
Sbjct: 1187 PKELWLHDLDAFEHAW-NKVMDDIQREMLEEEQS 1219


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1564

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +2

Query: 428  YPTKCGTN*KVEEEHTSLSFKLDQRYKLNESISILKCK*LVLRF*NIYIYIFV 586
            Y  K   N  +  E TS  FK+      NE++S+L  +  +LR  +I+I  FV
Sbjct: 1159 YNIKLAKNMLLNTEDTS--FKISMMMSANENLSLLDAQAALLRSWSIFICAFV 1209


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
 Frame = +3

Query: 156 TSTGSVKMNRVSSSGPVSARTLGS*TGSCVAATGAL---PRRDSTGVHTESRCSEYGKPK 326
           +S GS +    S   P  + + GS   S +    +L   P+R STG+H  S  + +  P 
Sbjct: 227 SSFGSQRQFNASQDSPKRSPSKGS--WSSILRRPSLTYSPKRQSTGLHRRSLTNYFKFPH 284

Query: 327 RCRHE-RAVQH 356
           R  H+  A+ H
Sbjct: 285 RNAHQHNAIAH 295


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 346 LFSIPKDFWLQESDAIEKYFKEEVGED 426
           L   P D   Q+SD++    KEE+G+D
Sbjct: 11  LVETPSDLNAQDSDSLSVSTKEELGDD 37


>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = -3

Query: 425 SSPTSSLKYFSMASDSCSQKSLGMLNSSFMSTALRFSVFRAPA 297
           SSPTS     S AS   S  SLG   ++  S+  + S+ R PA
Sbjct: 295 SSPTSESALNSPASSVSSLPSLGASQTTDSSSLNQSSLLRRPA 337


>SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase
           Atp23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 185

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 256 EPCHAETPLGYIPRAGALNTEN 321
           +PC A++  GYIP  G +  EN
Sbjct: 51  QPCDAQSTGGYIPGKGIVLCEN 72


>SPAC17H9.11 |||cofilin/tropomyosin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 141

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 334 DMNELFSIPKDFWLQESDAIEKYFKEEVGEDLPNEMWDE 450
           D++ +++  K  W Q+   + K F+    ED+ +E  DE
Sbjct: 101 DLSMIYASAK-VWFQDVSQVHKVFEARDSEDITSEAVDE 138


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 565 YIYLYFRNENREKY 606
           Y+YL  RNEN EKY
Sbjct: 5   YVYLLDRNENFEKY 18


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,228,609
Number of Sequences: 5004
Number of extensions: 68021
Number of successful extensions: 186
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)