Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0041
(778 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1204 - 25267546-25268219,25268319-25268452,25269567-252696... 29 4.1
07_01_0431 + 3283252-3283274,3283684-3283819,3285839-3286682,328... 29 4.1
07_01_0010 + 72162-74303,74470-74545,75971-76043,76496-76540,779... 29 4.1
10_06_0040 + 9988019-9988411 29 5.4
08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767 29 5.4
08_01_0724 - 6426263-6426514,6428511-6428742,6429081-6429400,643... 29 5.4
12_02_1218 - 27088206-27088214,27088577-27088643,27088755-270888... 28 9.5
07_03_0030 - 12623238-12623396,12623494-12623687,12624228-126243... 28 9.5
06_03_1105 - 27634787-27636025 28 9.5
03_02_0996 - 13082540-13082818,13083107-13083221,13084135-130842... 28 9.5
03_01_0360 + 2815067-2816033,2816120-2816198,2816275-2816342,281... 28 9.5
>08_02_1204 -
25267546-25268219,25268319-25268452,25269567-25269661,
25270289-25270304,25270635-25270684,25270960-25271331
Length = 446
Score = 29.1 bits (62), Expect = 4.1
Identities = 33/109 (30%), Positives = 44/109 (40%)
Frame = -1
Query: 343 RSCRQRLGFPYSEHRLSVCTPVESRRGRAPVAATQDPV*DPRVLAETGPEELTLFIFTEP 164
RSCR+RL ++E R TP+ SR GR + A G E FT
Sbjct: 190 RSCRRRLA-GHNERRRRPQTPLASRYGR--------------LAASVGEEHRRFRSFT-- 232
Query: 163 VDVEDLGHVSSRLRHRRPVLQXXXXXXXXERTHRKRIVHHHFTAVFGGG 17
+D V S +R+ P +Q + HR H H +AV G G
Sbjct: 233 LDFS-YPRVPSSVRNAWPAIQPGDRISGGIQWHRNVAPHGHSSAVAGYG 280
>07_01_0431 +
3283252-3283274,3283684-3283819,3285839-3286682,
3286785-3286856,3286906-3286937,3287020-3287433
Length = 506
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 322 LSAVDMNELFSIPKDFWLQESDAIEKYF 405
L V E+++I KD W+QE A+ YF
Sbjct: 479 LEDVQKREIYAIMKDRWIQEPKAMLSYF 506
>07_01_0010 + 72162-74303,74470-74545,75971-76043,76496-76540,
77916-78116,78463-78541,78637-78678,78788-78847,
79087-80484,80777-80902,81037-81300
Length = 1501
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -1
Query: 712 TTQPSDF*HKHQTFPFINTNARDPCVWCIVSVKQKGTSLGFHYENIN 572
T+ PS H+T I+ R+ C+W I +Q+ TS EN N
Sbjct: 1102 TSNPSFHSELHKTLEPISREEREDCMWHIRYRQQESTSSALLQENGN 1148
>10_06_0040 + 9988019-9988411
Length = 130
Score = 28.7 bits (61), Expect = 5.4
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Frame = +3
Query: 147 RSSTSTGSVKMNRVSSSGP--VSARTLGS*TGSCVAATGALPRRDSTGVHTESRC--SEY 314
RSS S R S P VSA + S VA++G L R+D G + RC SE
Sbjct: 21 RSSGRGKSSPQRRTQSDEPMRVSATADEAAAHSAVASSGVLDRQDRAGERGDRRCHGSED 80
Query: 315 G---KPKRCRHER 344
G + RC +R
Sbjct: 81 GSMDEVSRCLQQR 93
>08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767
Length = 1041
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = -2
Query: 384 RLLQPKVFRYAEQLVHVDSA*VFRIQSTGSRYVPQWSLGVAGLP 253
++L+P + R + H + R+ + ++ +P+W G GLP
Sbjct: 988 KVLKPSIERLWHNVKHDSGRSIIRLTAVAAKALPRWGGGREGLP 1031
>08_01_0724 -
6426263-6426514,6428511-6428742,6429081-6429400,
6433071-6433163,6433188-6433354,6433432-6433846
Length = 492
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -3
Query: 317 SVFRAPALGMYPSGVSAWQGSRRSDARSSLRPESSRRNR 201
S+ A LG+ P G+ W+G R D ++ RP+S R+R
Sbjct: 261 SLLEARILGI-PEGI--WRGPRGEDVGATARPDSLHRSR 296
>12_02_1218 -
27088206-27088214,27088577-27088643,27088755-27088821,
27088934-27089054,27089272-27089351,27089574-27089686,
27090305-27090420,27090507-27090575,27090684-27090758,
27090836-27090880,27091100-27091187,27091488-27091570,
27091655-27091705,27091848-27091905,27092019-27092201,
27092385-27092546,27092713-27093029
Length = 567
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/66 (24%), Positives = 29/66 (43%)
Frame = -3
Query: 455 FNSSHISLGRSSPTSSLKYFSMASDSCSQKSLGMLNSSFMSTALRFSVFRAPALGMYPSG 276
F+SS + +P + F + + ++G+ + M A +S +R P G+Y G
Sbjct: 498 FSSSVVGYDMLTPPDLEREFGLTGGNIFHGAMGLDSLFLMRPAKGWSDYRTPVKGLYLCG 557
Query: 275 VSAWQG 258
A G
Sbjct: 558 SGAHPG 563
>07_03_0030 -
12623238-12623396,12623494-12623687,12624228-12624332,
12625328-12625392,12626151-12626350,12626466-12626604,
12626677-12626804,12630145-12630369,12630461-12630670
Length = 474
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = -2
Query: 729 NIFKFRLHSLPIFDTNIKPSLLLTLMPVTHVCGALSVSNKRVLLSVFITKI 577
+I+ F H+LP+ D + H C S+S R+L S+ I
Sbjct: 202 HIYSFNQHALPVTDVACCHGAIAVSSSEDHTCKIWSLSEGRMLRSISFPSI 252
>06_03_1105 - 27634787-27636025
Length = 412
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -1
Query: 328 RLGFPYSEHRLSVCTPVESRRGRAPVAATQDPV*DPRVLAETGP 197
R+ S HR S + SR GR+P P PR L+ P
Sbjct: 267 RIRLVRSSHRHSTSSSSSSRAGRSPARRRPSPPPPPRCLSVDSP 310
>03_02_0996 -
13082540-13082818,13083107-13083221,13084135-13084235,
13084890-13085117,13085789-13086106,13086200-13086484,
13086566-13086913
Length = 557
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -3
Query: 335 STALRFSVFRAPALGMYPSGVSAWQGSRRSDARSSLRPESSRRNRARG 192
++ALR F PS + A+ S+ DA+ R E +RR RA G
Sbjct: 387 TSALRSDFFTTEPYACEPSSLPAYPPSKEMDAKR--RDEEARRLRAAG 432
>03_01_0360 +
2815067-2816033,2816120-2816198,2816275-2816342,
2817382-2817464,2821566-2823083
Length = 904
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +3
Query: 234 GSCVAATGALPRRDSTGVHTES 299
G+ A+T A+PR++ T +HTES
Sbjct: 627 GAQSASTTAIPRKNGTSMHTES 648
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,485,165
Number of Sequences: 37544
Number of extensions: 468698
Number of successful extensions: 1407
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1407
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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