Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0041
(778 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37397| Best HMM Match : PEPCK (HMM E-Value=0) 127 1e-29
SB_37396| Best HMM Match : PEPCK (HMM E-Value=0) 125 5e-29
SB_3810| Best HMM Match : PEPCK (HMM E-Value=0) 97 1e-20
SB_39663| Best HMM Match : ResIII (HMM E-Value=1.1) 33 0.34
SB_53060| Best HMM Match : ResIII (HMM E-Value=0.14) 30 2.4
SB_32195| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_59316| Best HMM Match : LRR_1 (HMM E-Value=0) 29 4.2
SB_2948| Best HMM Match : Galactosyl_T (HMM E-Value=7.5) 29 4.2
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_58663| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.7
SB_11| Best HMM Match : E6 (HMM E-Value=2.2) 28 9.7
>SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 613
Score = 127 bits (306), Expect = 1e-29
Identities = 54/85 (63%), Positives = 64/85 (75%), Gaps = 1/85 (1%)
Frame = +2
Query: 5 TRATAAAEHSGKMVMHDPFAMRPFXGYNFGDYLKHWPSMPQ-PGRNMPKIFHVNWFRKDE 181
+ TAAAE GK VM DPFAMRPF GYNFG YL+HW ++ + P + +P IFHVNWFR D+
Sbjct: 448 SETTAAAEFKGKAVMRDPFAMRPFFGYNFGKYLEHWLNLSKDPKKKLPLIFHVNWFRLDK 507
Query: 182 QGKFLWPGFGENSRVLDWILRRCDG 256
FLWPGFGENSRVL+W+ RR G
Sbjct: 508 NEHFLWPGFGENSRVLEWVFRRVHG 532
Score = 65.3 bits (152), Expect = 5e-11
Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 4/66 (6%)
Frame = +1
Query: 274 TPLGYIPRAGALNTENL----SAVDMNELFSIPKDFWLQESDAIEKYFKEEVGEDLPNEM 441
+P+G +P+ G+LN + L + NE+FSIPKD+WL+E + KYF +EVG DLP +
Sbjct: 539 SPVGLLPKYGSLNLDGLKDPVTPEAWNEMFSIPKDYWLEELTELRKYFTDEVGIDLPKAI 598
Query: 442 WDELKS 459
DEL +
Sbjct: 599 EDELNA 604
>SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 549
Score = 125 bits (301), Expect = 5e-29
Identities = 54/82 (65%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
Frame = +2
Query: 5 TRATAAAEHSGKMVMHDPFAMRPFXGYNFGDYLKHWPSMPQ-PGRNMPKIFHVNWFRKDE 181
+ TAAAE GK VM DPFAMRPF GYNFG YL+HW SM + P + +P IFHVNWFR D
Sbjct: 327 SETTAAAEFKGKAVMRDPFAMRPFFGYNFGKYLEHWLSMEKDPKKKLPLIFHVNWFRLDN 386
Query: 182 QGKFLWPGFGENSRVLDWILRR 247
FLWPGFGENSRVL+W+ R
Sbjct: 387 TEHFLWPGFGENSRVLEWVFNR 408
Score = 68.5 bits (160), Expect = 6e-12
Identities = 30/64 (46%), Positives = 45/64 (70%), Gaps = 4/64 (6%)
Frame = +1
Query: 274 TPLGYIPRAGALNTENLSAV----DMNELFSIPKDFWLQESDAIEKYFKEEVGEDLPNEM 441
+P+G IP+ GALN E + M ELFSIPK++WL E +++ KYF++E+G+DLP +
Sbjct: 418 SPVGLIPKQGALNLEQMETPVTPEAMKELFSIPKEYWLDEVESLRKYFQQEIGDDLPKAI 477
Query: 442 WDEL 453
+EL
Sbjct: 478 SNEL 481
>SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 707
Score = 97.1 bits (231), Expect = 1e-20
Identities = 42/70 (60%), Positives = 49/70 (70%), Gaps = 4/70 (5%)
Frame = +2
Query: 5 TRATAAAEHSGKMVMHDPFAMRPFXGYNFGDYLKHWPSM----PQPGRNMPKIFHVNWFR 172
+ TAAAE GK +M DPFAMRPF GYN+G YL+HW SM P +P IFHVNWFR
Sbjct: 637 SETTAAAEFKGKAIMRDPFAMRPFFGYNYGRYLEHWLSMADKTKHPNYKLPDIFHVNWFR 696
Query: 173 KDEQGKFLWP 202
+E+G FLWP
Sbjct: 697 VNEKGHFLWP 706
>SB_39663| Best HMM Match : ResIII (HMM E-Value=1.1)
Length = 1143
Score = 32.7 bits (71), Expect = 0.34
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -3
Query: 272 SAWQGSRRSDARSSLRPESSRRNRARGTYPVHLYGTS*RGRSWAC 138
S W+GS +R R +++R ARG +P+H G + R W C
Sbjct: 298 SLWRGSA---SRYQCRRKNARGEGARGAHPLHKQGDPQKQRVWLC 339
>SB_53060| Best HMM Match : ResIII (HMM E-Value=0.14)
Length = 1248
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = -3
Query: 272 SAWQGSRRSDARSSLRPESSRRNRARGTYPVHLYGTS*RGRS---WACF 135
S W+GS +R R ++SR ARG +P+H G + WAC+
Sbjct: 372 SLWRGSA---SRYQCRRKNSRGEGARGAHPLHKQGDPQKHEGLAVWACY 417
>SB_32195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 29.9 bits (64), Expect = 2.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 300 RCSEYGKPKRCRHERA 347
+CSEYG P+ C ERA
Sbjct: 196 QCSEYGNPRECEEERA 211
>SB_59316| Best HMM Match : LRR_1 (HMM E-Value=0)
Length = 680
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 271 ETPLGYIPRAGALNTENLSAVDMNELFSIPKD 366
E P G++P ALN L +D N+L +P D
Sbjct: 28 ELPRGFVPEVAALNITTLK-LDFNDLQRLPDD 58
>SB_2948| Best HMM Match : Galactosyl_T (HMM E-Value=7.5)
Length = 361
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = -3
Query: 449 SSHISLGRSSPTSSLKYFSMASDSCSQK----SLGMLNSSFMSTALRFSVFRAPALGMYP 282
S+ I + ++ P +Y+S A DSC Q S+G+ +SS S +R S R ++G+
Sbjct: 172 SNLIGIHQAYPKHMREYWSFAKDSCIQDLRVFSIGIRDSSVFSIGIRDS--RVFSIGIRD 229
Query: 281 SGV 273
S V
Sbjct: 230 SSV 232
>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3762
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 297 SRYVPQWSLGVAGLPSQRRKIQSKTREFSPKPGQ 196
S+ Q + +A P++R QS +F+PKPGQ
Sbjct: 639 SKSSTQNATNIASEPAKREDQQSLAEKFAPKPGQ 672
>SB_58663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1008
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 246 AATGALPRRDSTGVHTESRCSEYGKPKRCRHER 344
AA+ PRR+ST T + E PK+C+ +R
Sbjct: 931 AASDTTPRRESTKKETVAFTIENSPPKKCKVQR 963
>SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1200
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = +1
Query: 253 REPCHAETPLGYIPRAGALNTENLSAVDMNELFSIPKDFWLQESDAIEKYFKEEVGED 426
R P GY PR G ++ +L A N S+ + SD E +EE E+
Sbjct: 312 RRPLRRLGTTGYGPRPGVGHSVSLPAASFNHYLSVMRGTGSGRSDTEETIEEEEENEE 369
>SB_11| Best HMM Match : E6 (HMM E-Value=2.2)
Length = 485
Score = 27.9 bits (59), Expect = 9.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 120 IDGQCFR*SPKL*PXNGRIANGSCITILP 34
+ QC R + P G++ G C++ILP
Sbjct: 331 VPSQCLRAPSQKKPVEGKVEEGQCLSILP 359
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,396,908
Number of Sequences: 59808
Number of extensions: 515826
Number of successful extensions: 1347
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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