Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0040
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   122   7e-29
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   121   9e-29
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ...    28   1.6  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  122 bits (293), Expect = 7e-29
 Identities = 54/92 (58%), Positives = 72/92 (78%)
 Frame = +2

Query: 242 PSAR*ARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGK 421
           PS   ARGH IE+IPE+PLVV D VQ   KTK+AV  L+ +KA+ D++KV  S++LRAGK
Sbjct: 134 PSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGK 193

Query: 422 GKMRNRRRIQRKGPLIIFNKDQGLTRAFRTSP 517
           GK+RNRR +QR+GPL++FN+D G+ +AFR  P
Sbjct: 194 GKLRNRRHVQRRGPLVVFNEDTGIVKAFRNIP 225



 Score =  121 bits (291), Expect = 1e-28
 Identities = 51/59 (86%), Positives = 55/59 (93%)
 Frame = +3

Query: 3   VSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 179
           VS++AGHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 54  VSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWH 112



 Score = 89.0 bits (211), Expect = 6e-19
 Identities = 43/87 (49%), Positives = 57/87 (65%)
 Frame = +1

Query: 478 QGSGSDSRFPHIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSK 657
           + +G    F +IPGVE            APGGHLGRFVIWT+SAFG LD +FGS    ++
Sbjct: 213 EDTGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQ 272

Query: 658 QKKNFNLPQPKMANTDLTRLLKSDEIR 738
            KKN+ LP+  ++N D+TRL+ SDEI+
Sbjct: 273 LKKNYFLPENIISNADVTRLINSDEIQ 299


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  121 bits (292), Expect = 9e-29
 Identities = 54/92 (58%), Positives = 72/92 (78%)
 Frame = +2

Query: 242 PSAR*ARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGK 421
           PS   ARGH IE+IPE+PLVV D VQ   KTK+AV  L+ +KA+ D++KV  S++LRAGK
Sbjct: 134 PSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGK 193

Query: 422 GKMRNRRRIQRKGPLIIFNKDQGLTRAFRTSP 517
           GK+RNRR +QR+GPL++FN+D G+ +AFR  P
Sbjct: 194 GKLRNRRHVQRRGPLVVFNEDAGIVKAFRNIP 225



 Score =  121 bits (291), Expect = 1e-28
 Identities = 51/59 (86%), Positives = 55/59 (93%)
 Frame = +3

Query: 3   VSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 179
           VS++AGHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 54  VSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWH 112



 Score = 89.4 bits (212), Expect = 5e-19
 Identities = 43/87 (49%), Positives = 57/87 (65%)
 Frame = +1

Query: 478 QGSGSDSRFPHIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSK 657
           + +G    F +IPGVE            APGGHLGRFVIWT+SAFG LD +FGS    ++
Sbjct: 213 EDAGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQ 272

Query: 658 QKKNFNLPQPKMANTDLTRLLKSDEIR 738
            KKN+ LP+  ++N D+TRL+ SDEI+
Sbjct: 273 LKKNYFLPENIISNADVTRLINSDEIQ 299


>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -1

Query: 287 RESFQ*CVL*PNERWDASSSNGCCQGRSPLSEVDATVPAPP 165
           R+S +   + PN  W  + + GC  G   L  + A +  PP
Sbjct: 178 RDSTRQVTIVPNRHWGGNGAIGCGVGHGVLHRLPAPLSGPP 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,893,164
Number of Sequences: 5004
Number of extensions: 55333
Number of successful extensions: 174
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)