Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0040
(740 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 128 4e-30
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 34 0.14
SB_31207| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 29 3.0
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 29 4.0
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05) 28 6.9
SB_22853| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042) 28 9.1
SB_23350| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
Length = 299
Score = 128 bits (310), Expect = 4e-30
Identities = 55/59 (93%), Positives = 57/59 (96%)
Frame = +3
Query: 3 VSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 179
V+K AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 51 VNKLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWH 109
Score = 109 bits (262), Expect = 2e-24
Identities = 49/87 (56%), Positives = 65/87 (74%)
Frame = +2
Query: 257 ARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRN 436
ARGH IEKI E+PLV++D ++ + KT AV L+ + A+ D+ K S+++RAGKGKMRN
Sbjct: 136 ARGHRIEKIAEVPLVISDAIESVTKTSAAVKLLKAVNAYEDVEKCIDSKKIRAGKGKMRN 195
Query: 437 RRRIQRKGPLIIFNKDQGLTRAFRTSP 517
RR + RKGPLII+N DQGL +AFR P
Sbjct: 196 RRTVMRKGPLIIYNNDQGLRQAFRNLP 222
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +1
Query: 487 GSDSRFPHIPGVEXXXXXXXXXXXXAPGGHLGR 585
G F ++PGVE PGGHLGR
Sbjct: 213 GLRQAFRNLPGVELQHVDRLNLLKLCPGGHLGR 245
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 33.9 bits (74), Expect = 0.14
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 138 HHDTCYRRHPDRTYGYHHHGHAEFGQQHVRYPMIRHWF 25
HH CY H Y Y+ H H + + H YP RH++
Sbjct: 20 HHYCCYCHH---RYCYYRHHHYCWYRHHYHYPCYRHYY 54
>SB_31207| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -2
Query: 445 TTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYNQ 296
+T + HF KT R +H+K P E GL+D+LD G+ Q
Sbjct: 18 STVLHHFIDKHAKTPRFLHMKP-----NGPGEGGGSSGLLDMLDAAGFEQ 62
>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -3
Query: 123 YRRHPDRTYGYHHHGHAEFGQQHVRYPMIRHWFGDQ 16
Y +HP T+ YHH H + ++ ++P + H + Q
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQVTHRYHQQ 447
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -3
Query: 123 YRRHPDRTYGYHHHGHAEFGQQHVRYPMIRHWFGDQPP 10
Y +HP T+ YH H + H ++P + H + Q P
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQVTHRYQYQHP 268
>SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 501
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 97 WVPPPRTRGIRATARPVPHD 38
W+PP RTR R T PV H+
Sbjct: 228 WMPPVRTRPARPTVMPVTHE 247
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 138 HHDTCYRRHPDRTYGYHHHGHAEFGQQHVRY 46
HH RH R + +HHH H E+ ++H RY
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH-RY 353
>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 147 TYVHHDTCYRRHPDRTYGYHHHGHA 73
TY H DT R+HPD H HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 27 TSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 143
T +E +G ++ R PR RGGG G G G RGGR
Sbjct: 983 TPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022
>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
Length = 1098
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +3
Query: 45 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 173
G GR + R P GGG R G +G M GG P W R
Sbjct: 271 GQGRGMGRGP---GGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310
>SB_22853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -3
Query: 591 DETSKMTSRSQLQEVQLVNIQE-LHTGDVRKAR 496
DETS +SRS++Q LV E LH D+ R
Sbjct: 39 DETSSPSSRSRIQASSLVKTNEFLHARDISPVR 71
>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
Length = 628
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +3
Query: 42 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 173
WG G+ + R GGG R G +G M GG P W R
Sbjct: 24 WGRGQG-GGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 66
>SB_23350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 704
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -2
Query: 493 QTLILVEDYEGSLTLDTTTVAHFTLTSTKTL 401
Q LIL+ Y + L+T+++ F+L S KT+
Sbjct: 235 QELILIPYYTEKVALETSSLIEFSLLSAKTI 265
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,376,016
Number of Sequences: 59808
Number of extensions: 488222
Number of successful extensions: 1809
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1756
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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