Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0040
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   113   9e-26
Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical pr...    30   2.0  
U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p...    29   4.6  
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical...    29   4.6  
X91803-1|CAA62913.1|  880|Caenorhabditis elegans sodium-calcium ...    28   8.0  
AL132858-14|CAJ90511.1|  873|Caenorhabditis elegans Hypothetical...    28   8.0  
AL132858-13|CAB60477.1|  880|Caenorhabditis elegans Hypothetical...    28   8.0  
AF016679-4|AAB66158.1|  430|Caenorhabditis elegans Hypothetical ...    28   8.0  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  113 bits (273), Expect = 9e-26
 Identities = 50/59 (84%), Positives = 53/59 (89%)
 Frame = +3

Query: 3   VSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 179
           V+ +AG Q SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH
Sbjct: 53  VNTKAGKQHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWH 111



 Score =  112 bits (269), Expect = 3e-25
 Identities = 50/92 (54%), Positives = 69/92 (75%)
 Frame = +2

Query: 242 PSAR*ARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGK 421
           P+   ARGH+I+++ E+PLVV+DKV+   KTK+AV+FLRR   W+DI KVY S+R RAGK
Sbjct: 133 PALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGK 192

Query: 422 GKMRNRRRIQRKGPLIIFNKDQGLTRAFRTSP 517
           GK+RNR+  Q+ GP++I+ +D    RAFR  P
Sbjct: 193 GKLRNRQHKQKLGPVVIYGQDAECARAFRNIP 224



 Score = 78.2 bits (184), Expect = 6e-15
 Identities = 35/79 (44%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
 Frame = +1

Query: 502 FPHIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQ-KKNFNL 678
           F +IPGV+            APGGHLGR +IWT+SAF +LD ++G+    S Q KK +++
Sbjct: 220 FRNIPGVDVMNVERLNLLKLAPGGHLGRLIIWTESAFKKLDTIYGTTVANSSQLKKGWSV 279

Query: 679 PQPKMANTDLTRLLKSDEI 735
           P P MAN+D +R+++S+E+
Sbjct: 280 PLPIMANSDFSRIIRSEEV 298


>Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical
           protein F40F8.11 protein.
          Length = 472

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/57 (35%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
 Frame = +3

Query: 3   VSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNMCRGGRMFAPTKP 164
           V K   H+    SW T     +  R  GGG  R   SG    G   RGGR     KP
Sbjct: 144 VQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGRFNGAPKP 200


>U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical
           protein B0361.8 protein.
          Length = 470

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = -2

Query: 451 LDTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYN 299
           L+  +VA   L  TKT+RL+ +  IRP      + + L  + + L+ +GYN
Sbjct: 265 LNIESVAESLLEDTKTVRLLSVGQIRPEKNHKLQLEVLHDVKEPLEKMGYN 315


>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +2

Query: 302 VADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQ-RLRAGKGKMRNRRRIQRKGPLIIFN 478
           V   V E+ KTK  VI  + LKA ++ +K  K + R++A K  M     +    P   F+
Sbjct: 413 VVTGVTEVAKTKLEVISDKMLKACAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPFFS 472

Query: 479 KD 484
           KD
Sbjct: 473 KD 474


>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +2

Query: 302 VADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQ-RLRAGKGKMRNRRRIQRKGPLIIFN 478
           V   V E+ KTK  VI  + LKA ++ +K  K + R++A K  M     +    P   F+
Sbjct: 413 VVTGVTEVAKTKLEVISDKMLKACAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPFFS 472

Query: 479 KD 484
           KD
Sbjct: 473 KD 474


>X91803-1|CAA62913.1|  880|Caenorhabditis elegans sodium-calcium
           exchanger protein.
          Length = 880

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -2

Query: 523 PHRGCAESASQTLILVEDYEGSLTLDTTTVAHF-TLTST 410
           PH  C E+     + V+   GS+  DTT   H+ T+  T
Sbjct: 394 PHYTCLENVGDVYLTVKCDRGSVPEDTTVTVHYRTIADT 432


>AL132858-14|CAJ90511.1|  873|Caenorhabditis elegans Hypothetical
           protein Y113G7A.4b protein.
          Length = 873

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -2

Query: 523 PHRGCAESASQTLILVEDYEGSLTLDTTTVAHF-TLTST 410
           PH  C E+     + V+   GS+  DTT   H+ T+  T
Sbjct: 394 PHYTCLENVGDVYLTVKCDRGSVPEDTTVTVHYRTIADT 432


>AL132858-13|CAB60477.1|  880|Caenorhabditis elegans Hypothetical
           protein Y113G7A.4a protein.
          Length = 880

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -2

Query: 523 PHRGCAESASQTLILVEDYEGSLTLDTTTVAHF-TLTST 410
           PH  C E+     + V+   GS+  DTT   H+ T+  T
Sbjct: 394 PHYTCLENVGDVYLTVKCDRGSVPEDTTVTVHYRTIADT 432


>AF016679-4|AAB66158.1|  430|Caenorhabditis elegans Hypothetical
           protein T28C12.3 protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = -2

Query: 505 ESASQTLILVEDYEGSLTLDTTTVAHFTL 419
           E + + L++++ +E + TL  TTVA+F+L
Sbjct: 303 EDSVKELVILDQWEEAKTLSLTTVAYFSL 331


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,636,353
Number of Sequences: 27780
Number of extensions: 342592
Number of successful extensions: 1182
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)