Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0039
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    73   4e-14
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...    50   2e-07
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    28   0.99 
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    27   3.0  
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    26   5.3  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   5.3  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    26   5.3  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    25   7.0  

>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 72.9 bits (171), Expect = 4e-14
 Identities = 35/85 (41%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
 Frame = +1

Query: 16  ISVKVHPVVLFQIVDAYERRNADSHRVIGTLLGT--SDKGVVEVTNCFCVPHKEHADQVE 189
           +++ + P VLF I+D   R++ ++ RVIGTLLGT   D   +E+ +CF VPH E ++QVE
Sbjct: 21  LNIVIEPAVLFSILDHSTRKSENNQRVIGTLLGTRSEDGREIEIKSCFAVPHNESSEQVE 80

Query: 190 AELNYAMDVYELNRRVNSSESMLVG 264
            E+ Y   +Y L+ + N  E ++VG
Sbjct: 81  VEMEYHRAMYHLHLKANPRE-VVVG 104


>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
 Frame = +1

Query: 22  VKVHPVVLFQIVDAYERR-NADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEA-- 192
           V VHP+VL   VD+Y R       RV+G LLG ++  VV V N + +P +E         
Sbjct: 17  VIVHPLVLLSAVDSYNRSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASVWF 76

Query: 193 -ELNYAMDVYELNRRVNSSESML 258
            + N+   + E+ +++N++E ++
Sbjct: 77  LDHNFMESMNEMFKKINANEKLV 99


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
 Frame = +1

Query: 7   ELNISVKVHPVVLFQIVDAYERRNADSHRVI-----GTLLGTSDKGVVEVTNCFCVPHKE 171
           ELNI ++   +V+ ++++  ++RN D H  I       +  TSD  ++ + N F +    
Sbjct: 252 ELNIIIQEVDIVIGELIEGLKKRNIDKHVNIIFLSDHGMAPTSDNRLIWLDNMFNLSAVA 311

Query: 172 HAD 180
           H D
Sbjct: 312 HRD 314


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 64  YERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE 189
           Y+ R  DSHR I  L GT  +  +   +   + +K H  ++E
Sbjct: 483 YDHRLRDSHREIYQLQGTGYRPFLRANDNASINNKNHHKELE 524


>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 18/81 (22%), Positives = 38/81 (46%)
 Frame = +1

Query: 190 AELNYAMDVYELNRRVNSSESMLVGGRLAMK*PTTPLLYTSIIPVNAVSLSMLLWTLRWL 369
           A +   MDV EL R ++S    +VG    +   T   +   ++ + AV +  LL+  +  
Sbjct: 326 ANVGLVMDVQELGRAIDSKAVCIVGQVCGVT-ITIVWIILILLTLRAVYVQELLYPGKDE 384

Query: 370 EVEWVYVHMFVYHWECQMESK 432
           +++ +  ++  Y+   + E K
Sbjct: 385 DIDTILPNVLEYYRHLEEEEK 405


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -2

Query: 446 SEHATLLSIWHSQWYTNICT*THSTSSQRSVQSNMDRLTAFTGI 315
           S  A +L  +   W+ N+      T S+RS+ +N D +T+F+ +
Sbjct: 410 SAKARILDSFCIDWHLNV-----QTMSERSILTNRDFITSFSAV 448


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 75  KCRFSQSYRHLIGHERQRSGG-SNQLLLRATQRTCRSSRSGT*LRDGCL 218
           + R S SY   I  ++  SGG + + L  A  RTC  S + T L + CL
Sbjct: 201 RSRSSSSYS--INKKKGTSGGQATRHLTYALSRTCSQSSNTTSLLESCL 247


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +2

Query: 437 HVHSCRCHSHM 469
           H+H CRCH+++
Sbjct: 69  HIHCCRCHTYI 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,551,889
Number of Sequences: 5004
Number of extensions: 55630
Number of successful extensions: 156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)