Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0039
(639 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0034 - 228939-229028,229117-229230,229309-229430,229827-23... 67 1e-11
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130... 59 3e-09
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124... 40 0.002
07_03_0737 + 21087442-21088282,21088402-21088524,21088623-210887... 29 2.4
07_03_1709 - 28873172-28873327,28873519-28873584,28874067-288741... 29 4.1
11_01_0433 - 3323372-3324616,3324708-3324905 28 5.4
06_03_0630 + 22926652-22928133 28 7.2
05_05_0039 - 21782093-21782320,21782383-21782754,21783031-217834... 28 7.2
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810... 28 7.2
02_05_0533 - 29818276-29818866 27 9.5
01_06_1089 - 34451982-34452670,34452755-34452814,34453287-344533... 27 9.5
>05_01_0034 -
228939-229028,229117-229230,229309-229430,229827-230056,
230458-230537,230641-230859
Length = 284
Score = 67.3 bits (157), Expect = 1e-11
Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Frame = +1
Query: 19 SVKVHPVVLFQIVDAYERRNADSHRVIGTLLGT-SDKGVVEVTNCFCVPHKEHADQVEAE 195
S +V VV+F I D+Y RR + RVIGTLLG+ G V V N + VPH E DQV +
Sbjct: 18 SARVEAVVVFNICDSYVRRPDQAERVIGTLLGSVLPDGTVHVRNSYVVPHNESPDQVALD 77
Query: 196 LNYAMDVYELNRRVNSSESMLVG 264
+ Y ++Y + +VN E ++VG
Sbjct: 78 IEYHHNMYASHHKVNPKE-VIVG 99
Score = 62.5 bits (145), Expect = 3e-10
Identities = 30/90 (33%), Positives = 50/90 (55%)
Frame = +3
Query: 255 VGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYVCVPLGVPNGKQG 434
VGW++TG V+ S++IH++YSRE + P+H+T+DT G ++AY+ L + +
Sbjct: 98 VGWFSTGFGVSGGSTLIHDFYSREVQSPIHLTVDTGFTRGDASIKAYISSNLSLGDRHLA 157
Query: 435 CMFTPVDVTLTCYEPEIVGLQVCQKLCLVE 524
F + + L E VG + K +VE
Sbjct: 158 AQFQEIPLDLRMLEAGKVGFDIL-KSTIVE 186
>04_04_1468 +
33811471-33811657,33811888-33811980,33812899-33813027,
33813089-33813166,33813377-33813435,33813522-33813644,
33814225-33814282,33814383-33814468,33814564-33814635
Length = 294
Score = 58.8 bits (136), Expect = 3e-09
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Frame = +1
Query: 22 VKVHPVVLFQIVDAYERRNADSH-RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE--- 189
V VHP+VL IVD Y R D+ RV+G LLGTS +G V+VTN + VP +E
Sbjct: 17 VVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGSVDVTNSYAVPFEEDDKDPRIWF 76
Query: 190 AELNYAMDVYELNRRVNS 243
+ NY ++ + +R+N+
Sbjct: 77 LDHNYHESMFSMFKRINA 94
>04_03_0650 -
18411588-18411645,18412020-18412172,18412340-18412407,
18412499-18412600,18412695-18412766,18412843-18412891,
18412971-18413104,18413488-18413554,18414471-18414574,
18414677-18414793,18415538-18415647,18415763-18415772
Length = 347
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 94 VIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAE-LNYAMDVYELNRRVN 240
V G LLG V+EVTNCF P +E ++ +A+ NY +++ R VN
Sbjct: 57 VTGQLLGLDVGSVLEVTNCFPFPMREDDEEADADGANYQLEMMRCLREVN 106
>07_03_0737 +
21087442-21088282,21088402-21088524,21088623-21088744,
21088784-21089027,21089430-21089670,21089746-21089899,
21090179-21090214,21090215-21090520
Length = 688
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Frame = +3
Query: 156 RATQRTCRSSRSGT*LRDGCLRAEQKSQFL*KYVGWWATGNEV-----TNHSSVIHEYYS 320
R +R C SS+ T +DGC+ +FL +VG + +E+ +N ++V +++
Sbjct: 97 RVARRDCPSSKDATTYQDGCIVRFSDQRFL-DFVGVNSPVSELYSDADSNITAVPVAWFN 155
Query: 321 RECREPVHVTLDTSLAGG 374
++ T+DT++A G
Sbjct: 156 AAVVALMNATVDTAVAAG 173
>07_03_1709 -
28873172-28873327,28873519-28873584,28874067-28874127,
28875406-28875462,28876301-28876531,28876685-28876799,
28876897-28877136,28877222-28877316,28877406-28877585,
28877663-28877839,28877920-28878890
Length = 782
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 433 PCFPFGTPNGTQTYARKPIRPPASEVSRVTWTG 335
P PF +P + +AR P P +E+S TG
Sbjct: 599 PDSPFASPTKSAGFARDPFAPTEAEISATASTG 631
>11_01_0433 - 3323372-3324616,3324708-3324905
Length = 480
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -1
Query: 237 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVG 142
D++V L+ IH+ I F F ++FVW +A+G
Sbjct: 321 DAAVVLMLIHQFITFGFACTPLYFVWE-KAIG 351
>06_03_0630 + 22926652-22928133
Length = 493
Score = 27.9 bits (59), Expect = 7.2
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 7/117 (5%)
Frame = +1
Query: 85 SHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYELNRRVNSSESM--L 258
+HR++ L + V+ T VPH + D +A D Y R +ES+ +
Sbjct: 51 AHRLMFPSLPSPAGEDVDDTGVAYVPHSDGYDDGYKPGVHARDDYMARTRAAGTESLSAI 110
Query: 259 VGGRLAMK*PTTPLLYTSII-----PVNAVSLSMLLWTLRWLEVEWVYVHMFVYHWE 414
V A P T ++YT ++ A+ + ++ ++ VY H F H E
Sbjct: 111 VAALAARGRPVTCIVYTFLVVWAPAVARALGIPSAIYWIQPAAAFAVYYHYFHGHGE 167
>05_05_0039 -
21782093-21782320,21782383-21782754,21783031-21783496,
21784896-21784993,21785179-21785362,21785462-21785574,
21785942-21786127,21786191-21786364
Length = 606
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -1
Query: 237 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVG 142
D++V L+ IH+ I F F ++FVW +A+G
Sbjct: 311 DAAVILMLIHQFITFGFACTPLYFVWE-KAIG 341
>01_05_0320 -
20874691-20875230,20879337-20879590,20880014-20881087,
20881259-20881511,20881548-20882369
Length = 980
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 113 ARATKEWWK*PTASACHTKN-MPIKSK 190
A +KEWW +ACH N +P+K K
Sbjct: 508 AGLSKEWWGEAVLTACHVLNKIPMKHK 534
>02_05_0533 - 29818276-29818866
Length = 196
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 196 LNYAMDVYELNRRVNSSESMLVGGR-LAMK*PTTPLLYTSIIPVNAVSLS 342
L++ DV+ L+RRV+ L R + ++ P P + ++P A S S
Sbjct: 34 LSHVADVHTLHRRVDPEAGRLQAARSITVRSPPLPFILRRLLPAAASSPS 83
>01_06_1089 -
34451982-34452670,34452755-34452814,34453287-34453352,
34454055-34454253,34454470-34454719,34454830-34454898,
34455733-34455804,34456027-34456168,34456544-34457064,
34457166-34457739,34459164-34459269
Length = 915
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +1
Query: 310 SIIPVNAVSLSMLLWTLRWLEVEWVYVHMFVYHWECQMESKVACSL 447
S P VSL ++W + ++E W Y H + + +S+ SL
Sbjct: 627 SQFPYQFVSLFSVIWLISYIENVWTYGHRYRELRSSKQDSRYDSSL 672
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,502,228
Number of Sequences: 37544
Number of extensions: 398763
Number of successful extensions: 1047
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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