Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0039
(639 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U94855-1|AAD03467.1| 357|Homo sapiens translation initiation fa... 105 2e-22
CR456959-1|CAG33240.1| 357|Homo sapiens EIF3S5 protein. 105 2e-22
BT006894-1|AAP35540.1| 357|Homo sapiens eukaryotic translation ... 105 2e-22
BC000490-1|AAH00490.1| 357|Homo sapiens eukaryotic translation ... 105 2e-22
AK095574-1|BAC04577.1| 350|Homo sapiens protein ( Homo sapiens ... 105 2e-22
AF354444-1|AAK18634.1| 348|Homo sapiens IFP38 protein. 92 1e-18
D50063-1|BAA08780.1| 324|Homo sapiens proteasome subunit p40 / ... 50 7e-06
BC012606-1|AAH12606.1| 324|Homo sapiens proteasome (prosome, ma... 50 7e-06
BC000338-1|AAH00338.1| 326|Homo sapiens PSMD7 protein protein. 50 7e-06
AF092576-1|AAC84044.1| 352|Homo sapiens translation initiation ... 43 8e-04
U54559-1|AAD03465.1| 352|Homo sapiens translation initiation fa... 42 0.002
CR456906-1|CAG33187.1| 352|Homo sapiens EIF3S3 protein. 42 0.002
BT019594-1|AAV38401.1| 352|Homo sapiens eukaryotic translation ... 42 0.002
BC000386-1|AAH00386.1| 352|Homo sapiens eukaryotic translation ... 42 0.002
AK222620-1|BAD96340.1| 352|Homo sapiens eukaryotic translation ... 42 0.002
AK222520-1|BAD96240.1| 352|Homo sapiens eukaryotic translation ... 42 0.002
BC090880-1|AAH90880.1| 349|Homo sapiens EIF3H protein protein. 36 0.16
U70735-1|AAD03469.1| 297|Homo sapiens 34 kDa Mov34 homolog prot... 34 0.49
BC002520-1|AAH02520.2| 327|Homo sapiens COP9 constitutive photo... 34 0.49
BC041372-1|AAH41372.2| 296|Homo sapiens LOC283514 protein protein. 30 6.0
AL050051-1|CAB43251.1| 118|Homo sapiens hypothetical protein pr... 30 8.0
>U94855-1|AAD03467.1| 357|Homo sapiens translation initiation
factor 3 47 kDa subunit protein.
Length = 357
Score = 105 bits (251), Expect = 2e-22
Identities = 43/87 (49%), Positives = 60/87 (68%)
Frame = +3
Query: 255 VGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYVCVPLGVPNGKQG 434
+GW+ATG+++T HS +IHEYYSRE P+H+T+DTSL GRM ++AYV +GVP G
Sbjct: 170 LGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAYVSTLMGVPGRTMG 229
Query: 435 CMFTPVDVTLTCYEPEIVGLQVCQKLC 515
MFTP+ V Y+ E +G+ + K C
Sbjct: 230 VMFTPLTVKYAYYDTERIGVDLIMKTC 256
Score = 99.1 bits (236), Expect = 1e-20
Identities = 44/79 (55%), Positives = 61/79 (77%)
Frame = +1
Query: 22 VKVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELN 201
V++HPV+L IVD+YERRN + RVIGTLLGT DK VEVTNCF VPH E D+V ++
Sbjct: 92 VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 151
Query: 202 YAMDVYELNRRVNSSESML 258
+A ++YEL+++V+ +E +L
Sbjct: 152 FAKNMYELHKKVSPNELIL 170
>CR456959-1|CAG33240.1| 357|Homo sapiens EIF3S5 protein.
Length = 357
Score = 105 bits (251), Expect = 2e-22
Identities = 43/87 (49%), Positives = 60/87 (68%)
Frame = +3
Query: 255 VGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYVCVPLGVPNGKQG 434
+GW+ATG+++T HS +IHEYYSRE P+H+T+DTSL GRM ++AYV +GVP G
Sbjct: 170 LGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAYVSTLMGVPGRTMG 229
Query: 435 CMFTPVDVTLTCYEPEIVGLQVCQKLC 515
MFTP+ V Y+ E +G+ + K C
Sbjct: 230 VMFTPLTVKYAYYDTERIGVDLIMKTC 256
Score = 99.1 bits (236), Expect = 1e-20
Identities = 44/79 (55%), Positives = 61/79 (77%)
Frame = +1
Query: 22 VKVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELN 201
V++HPV+L IVD+YERRN + RVIGTLLGT DK VEVTNCF VPH E D+V ++
Sbjct: 92 VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 151
Query: 202 YAMDVYELNRRVNSSESML 258
+A ++YEL+++V+ +E +L
Sbjct: 152 FAKNMYELHKKVSPNELIL 170
>BT006894-1|AAP35540.1| 357|Homo sapiens eukaryotic translation
initiation factor 3, subunit 5 epsilon, 47kDa protein.
Length = 357
Score = 105 bits (251), Expect = 2e-22
Identities = 43/87 (49%), Positives = 60/87 (68%)
Frame = +3
Query: 255 VGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYVCVPLGVPNGKQG 434
+GW+ATG+++T HS +IHEYYSRE P+H+T+DTSL GRM ++AYV +GVP G
Sbjct: 170 LGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAYVSTLMGVPGRTMG 229
Query: 435 CMFTPVDVTLTCYEPEIVGLQVCQKLC 515
MFTP+ V Y+ E +G+ + K C
Sbjct: 230 VMFTPLTVKYAYYDTERIGVDLIMKTC 256
Score = 99.1 bits (236), Expect = 1e-20
Identities = 44/79 (55%), Positives = 61/79 (77%)
Frame = +1
Query: 22 VKVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELN 201
V++HPV+L IVD+YERRN + RVIGTLLGT DK VEVTNCF VPH E D+V ++
Sbjct: 92 VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 151
Query: 202 YAMDVYELNRRVNSSESML 258
+A ++YEL+++V+ +E +L
Sbjct: 152 FAKNMYELHKKVSPNELIL 170
>BC000490-1|AAH00490.1| 357|Homo sapiens eukaryotic translation
initiation factor 3, subunit 5 epsilon, 47kDa protein.
Length = 357
Score = 105 bits (251), Expect = 2e-22
Identities = 43/87 (49%), Positives = 60/87 (68%)
Frame = +3
Query: 255 VGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYVCVPLGVPNGKQG 434
+GW+ATG+++T HS +IHEYYSRE P+H+T+DTSL GRM ++AYV +GVP G
Sbjct: 170 LGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAYVSTLMGVPGRTMG 229
Query: 435 CMFTPVDVTLTCYEPEIVGLQVCQKLC 515
MFTP+ V Y+ E +G+ + K C
Sbjct: 230 VMFTPLTVKYAYYDTERIGVDLIMKTC 256
Score = 99.1 bits (236), Expect = 1e-20
Identities = 44/79 (55%), Positives = 61/79 (77%)
Frame = +1
Query: 22 VKVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELN 201
V++HPV+L IVD+YERRN + RVIGTLLGT DK VEVTNCF VPH E D+V ++
Sbjct: 92 VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 151
Query: 202 YAMDVYELNRRVNSSESML 258
+A ++YEL+++V+ +E +L
Sbjct: 152 FAKNMYELHKKVSPNELIL 170
>AK095574-1|BAC04577.1| 350|Homo sapiens protein ( Homo sapiens
cDNA FLJ38255 fis, clone FCBBF3001020, highly similar to
EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 5. ).
Length = 350
Score = 105 bits (251), Expect = 2e-22
Identities = 43/87 (49%), Positives = 60/87 (68%)
Frame = +3
Query: 255 VGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYVCVPLGVPNGKQG 434
+GW+ATG+++T HS +IHEYYSRE P+H+T+DTSL GRM ++AYV +GVP G
Sbjct: 163 LGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAYVSTLMGVPGRTMG 222
Query: 435 CMFTPVDVTLTCYEPEIVGLQVCQKLC 515
MFTP+ V Y+ E +G+ + K C
Sbjct: 223 VMFTPLTVKYAYYDTERIGVDLIMKTC 249
Score = 99.1 bits (236), Expect = 1e-20
Identities = 44/79 (55%), Positives = 61/79 (77%)
Frame = +1
Query: 22 VKVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELN 201
V++HPV+L IVD+YERRN + RVIGTLLGT DK VEVTNCF VPH E D+V ++
Sbjct: 85 VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 144
Query: 202 YAMDVYELNRRVNSSESML 258
+A ++YEL+++V+ +E +L
Sbjct: 145 FAKNMYELHKKVSPNELIL 163
>AF354444-1|AAK18634.1| 348|Homo sapiens IFP38 protein.
Length = 348
Score = 92.3 bits (219), Expect = 1e-18
Identities = 39/87 (44%), Positives = 58/87 (66%)
Frame = +3
Query: 255 VGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYVCVPLGVPNGKQG 434
+GW+A G+++T HS +IHEYYSRE P+H+T+DTSL G M ++AYV +GVP G+
Sbjct: 159 LGWYAAGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGHMSIKAYVSTLMGVP-GRTV 217
Query: 435 CMFTPVDVTLTCYEPEIVGLQVCQKLC 515
+FTP+ V Y+ E + + + K C
Sbjct: 218 GVFTPLTVKYAYYDTECIRVDLIMKTC 244
Score = 85.0 bits (201), Expect = 2e-16
Identities = 40/79 (50%), Positives = 60/79 (75%)
Frame = +1
Query: 22 VKVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELN 201
V++HPV+L VD+YERRN + RVIGTLLGT +K VEVTNCF V + E +D+V ++
Sbjct: 82 VRLHPVLLASTVDSYERRNKGAARVIGTLLGTVNKHSVEVTNCFSVSYNE-SDEVVVDME 140
Query: 202 YAMDVYELNRRVNSSESML 258
+A ++YEL+++V+ +E +L
Sbjct: 141 FAKNMYELHKKVSPNELIL 159
>D50063-1|BAA08780.1| 324|Homo sapiens proteasome subunit p40 /
Mov34 protein protein.
Length = 324
Score = 50.0 bits (114), Expect = 7e-06
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 5/84 (5%)
Frame = +1
Query: 22 VKVHPVVLFQIVDAYER--RNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKE--HADQV- 186
V VHP+VL +VD + R + + RV+G LLG+ K V++V+N F VP E D V
Sbjct: 9 VVVHPLVLLSVVDHFNRIVKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVW 68
Query: 187 EAELNYAMDVYELNRRVNSSESML 258
+ +Y ++Y + ++VN+ E ++
Sbjct: 69 FLDHDYLENMYGMFKKVNARERIV 92
Score = 30.7 bits (66), Expect = 4.6
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = +3
Query: 249 KYVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYVCVPLGVPNG- 425
+ VGW+ TG ++ + I+E R C V V +D + AY+ V +G
Sbjct: 90 RIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEDQDDGT 149
Query: 426 KQGCMFTPVDVTLTCYEPEIVGLQ 497
F V + E E VG++
Sbjct: 150 PTSKTFEHVTSEIGAEEAEEVGVE 173
>BC012606-1|AAH12606.1| 324|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 7 (Mov34 homolog)
protein.
Length = 324
Score = 50.0 bits (114), Expect = 7e-06
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 5/84 (5%)
Frame = +1
Query: 22 VKVHPVVLFQIVDAYER--RNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKE--HADQV- 186
V VHP+VL +VD + R + + RV+G LLG+ K V++V+N F VP E D V
Sbjct: 9 VVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVW 68
Query: 187 EAELNYAMDVYELNRRVNSSESML 258
+ +Y ++Y + ++VN+ E ++
Sbjct: 69 FLDHDYLENMYGMFKKVNARERIV 92
Score = 30.3 bits (65), Expect = 6.0
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Frame = +3
Query: 249 KYVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYVCVPL----GV 416
+ VGW+ TG ++ + I+E R C V V +D + AY+ V G
Sbjct: 90 RIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGT 149
Query: 417 PNGKQGCMFTPVDVTLTCYEPEIVGLQ 497
P K F V + E E VG++
Sbjct: 150 PTSK---TFEHVTSEIGAEEAEEVGVE 173
>BC000338-1|AAH00338.1| 326|Homo sapiens PSMD7 protein protein.
Length = 326
Score = 50.0 bits (114), Expect = 7e-06
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 5/84 (5%)
Frame = +1
Query: 22 VKVHPVVLFQIVDAYER--RNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKE--HADQV- 186
V VHP+VL +VD + R + + RV+G LLG+ K V++V+N F VP E D V
Sbjct: 9 VVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVW 68
Query: 187 EAELNYAMDVYELNRRVNSSESML 258
+ +Y ++Y + ++VN+ E ++
Sbjct: 69 FLDHDYLENMYGMFKKVNARERIV 92
Score = 30.3 bits (65), Expect = 6.0
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Frame = +3
Query: 249 KYVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYVCVPL----GV 416
+ VGW+ TG ++ + I+E R C V V +D + AY+ V G
Sbjct: 90 RIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGT 149
Query: 417 PNGKQGCMFTPVDVTLTCYEPEIVGLQ 497
P K F V + E E VG++
Sbjct: 150 PTSK---TFEHVTSEIGAEEAEEVGVE 173
>AF092576-1|AAC84044.1| 352|Homo sapiens translation initiation
factor eIF3 p40 subunit protein.
Length = 352
Score = 43.2 bits (97), Expect = 8e-04
Identities = 23/73 (31%), Positives = 36/73 (49%)
Frame = +1
Query: 22 VKVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELN 201
V++ +V+ +I+ Y+ + V G LLG K +E+TNCF P D E+
Sbjct: 39 VQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGLVVKDRLEITNCFPFPQHTEDDADFDEVQ 98
Query: 202 YAMDVYELNRRVN 240
Y M++ R VN
Sbjct: 99 YQMEMMRSLRHVN 111
>U54559-1|AAD03465.1| 352|Homo sapiens translation initiation
factor eIF3 p40 subunit protein.
Length = 352
Score = 41.5 bits (93), Expect = 0.002
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +1
Query: 22 VKVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELN 201
V++ +V+ +I+ Y+ + V G LLG + +E+TNCF P D E+
Sbjct: 39 VQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQ 98
Query: 202 YAMDVYELNRRVN 240
Y M++ R VN
Sbjct: 99 YQMEMMRSLRHVN 111
>CR456906-1|CAG33187.1| 352|Homo sapiens EIF3S3 protein.
Length = 352
Score = 41.5 bits (93), Expect = 0.002
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +1
Query: 22 VKVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELN 201
V++ +V+ +I+ Y+ + V G LLG + +E+TNCF P D E+
Sbjct: 39 VQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQ 98
Query: 202 YAMDVYELNRRVN 240
Y M++ R VN
Sbjct: 99 YQMEMMRSLRHVN 111
>BT019594-1|AAV38401.1| 352|Homo sapiens eukaryotic translation
initiation factor 3, subunit 3 gamma, 40kDa protein.
Length = 352
Score = 41.5 bits (93), Expect = 0.002
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +1
Query: 22 VKVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELN 201
V++ +V+ +I+ Y+ + V G LLG + +E+TNCF P D E+
Sbjct: 39 VQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQ 98
Query: 202 YAMDVYELNRRVN 240
Y M++ R VN
Sbjct: 99 YQMEMMRSLRHVN 111
>BC000386-1|AAH00386.1| 352|Homo sapiens eukaryotic translation
initiation factor 3, subunit 3 gamma, 40kDa protein.
Length = 352
Score = 41.5 bits (93), Expect = 0.002
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +1
Query: 22 VKVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELN 201
V++ +V+ +I+ Y+ + V G LLG + +E+TNCF P D E+
Sbjct: 39 VQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQ 98
Query: 202 YAMDVYELNRRVN 240
Y M++ R VN
Sbjct: 99 YQMEMMRSLRHVN 111
>AK222620-1|BAD96340.1| 352|Homo sapiens eukaryotic translation
initiation factor 3, subunit 3 gamma, 40kDa variant
protein.
Length = 352
Score = 41.5 bits (93), Expect = 0.002
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +1
Query: 22 VKVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELN 201
V++ +V+ +I+ Y+ + V G LLG + +E+TNCF P D E+
Sbjct: 39 VQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQ 98
Query: 202 YAMDVYELNRRVN 240
Y M++ R VN
Sbjct: 99 YQMEMMRSLRHVN 111
>AK222520-1|BAD96240.1| 352|Homo sapiens eukaryotic translation
initiation factor 3, subunit 3 gamma, 40kDa variant
protein.
Length = 352
Score = 41.5 bits (93), Expect = 0.002
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +1
Query: 22 VKVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELN 201
V++ +V+ +I+ Y+ + V G LLG + +E+TNCF P D E+
Sbjct: 39 VQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQ 98
Query: 202 YAMDVYELNRRVN 240
Y M++ R VN
Sbjct: 99 YQMEMMRSLRHVN 111
>BC090880-1|AAH90880.1| 349|Homo sapiens EIF3H protein protein.
Length = 349
Score = 35.5 bits (78), Expect = 0.16
Identities = 22/73 (30%), Positives = 35/73 (47%)
Frame = +1
Query: 22 VKVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELN 201
V++ +V+F+ Y+ + V G LLG + +E+TNCF P D E+
Sbjct: 39 VQIDGLVVFK---HYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQ 95
Query: 202 YAMDVYELNRRVN 240
Y M++ R VN
Sbjct: 96 YQMEMMRSLRHVN 108
>U70735-1|AAD03469.1| 297|Homo sapiens 34 kDa Mov34 homolog
protein.
Length = 297
Score = 33.9 bits (74), Expect = 0.49
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +1
Query: 13 NISVKVHPVVLFQIVDAYERRNADSHR---VIGTLLGTSDKGVVEVTNCF 153
++SV +HP+V+ I D + R + R VIG L+G + +EV N F
Sbjct: 8 SVSVALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQEGRNIEVMNSF 57
>BC002520-1|AAH02520.2| 327|Homo sapiens COP9 constitutive
photomorphogenic homolog subunit 6 (Arabidopsis)
protein.
Length = 327
Score = 33.9 bits (74), Expect = 0.49
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +1
Query: 13 NISVKVHPVVLFQIVDAYERRNADSHR---VIGTLLGTSDKGVVEVTNCF 153
++SV +HP+V+ I D + R + R VIG L+G + +EV N F
Sbjct: 38 SVSVALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQEGRNIEVMNSF 87
>BC041372-1|AAH41372.2| 296|Homo sapiens LOC283514 protein protein.
Length = 296
Score = 30.3 bits (65), Expect = 6.0
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +2
Query: 362 AGWRSNGFT-CICLCTIGSAKWKARLHV 442
AG +N T C+C+C + S +W+ RL V
Sbjct: 122 AGLHANPVTPCLCMCPLFSCQWEGRLEV 149
>AL050051-1|CAB43251.1| 118|Homo sapiens hypothetical protein
protein.
Length = 118
Score = 29.9 bits (64), Expect = 8.0
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 330 REPVHVTLDTSLAGGRMGLRAYVCVPLG-VPNGKQGCMFTPVDVTLTC 470
R PV V+ L G G+R+ + V L +P G+ GC FT + V L C
Sbjct: 10 RVPVRVSSAPGLGFGGAGMRSLLSVGLPPIPIGR-GCHFTLITVFLYC 56
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,888,457
Number of Sequences: 237096
Number of extensions: 2158024
Number of successful extensions: 10322
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 9900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10316
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7028963750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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