Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0039
(639 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g39990.1 68415.m04914 eukaryotic translation initiation facto... 71 9e-13
At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory su... 63 2e-10
At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su... 62 4e-10
At1g10840.1 68414.m01246 eukaryotic translation initiation facto... 40 0.001
At4g25070.1 68417.m03596 expressed protein ; expression supporte... 31 0.85
At5g01240.2 68418.m00032 amino acid permease, putative strong si... 30 1.1
At5g01240.1 68418.m00031 amino acid permease, putative strong si... 30 1.1
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 29 2.6
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 29 2.6
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 29 2.6
At5g22940.1 68418.m02682 exostosin family protein contains Pfam ... 28 4.5
At5g67570.1 68418.m08520 pentatricopeptide (PPR) repeat-containi... 28 6.0
At4g26430.1 68417.m03803 COP9 signalosome subunit 6 / CSN subuni... 28 6.0
At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM dom... 27 7.9
>At2g39990.1 68415.m04914 eukaryotic translation initiation factor 3
subunit 5 / eIF-3 epsilon / eIF3f (TIF3F1) identical to
SP|O04202 Eukaryotic translation initiation factor 3
subunit 5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 293
Score = 70.5 bits (165), Expect = 9e-13
Identities = 30/82 (36%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Frame = +1
Query: 16 ISVKVHPVVLFQIVDAYERRNADSHRVIGTLLGT-SDKGVVEVTNCFCVPHKEHADQVEA 192
++ ++HP+V+F + D + RR + RVIGTLLG+ G V++ N + VPH E +DQV
Sbjct: 26 LTARIHPLVIFNVCDCFVRRPDSAERVIGTLLGSILPDGTVDIRNSYAVPHNESSDQVAV 85
Query: 193 ELNYAMDVYELNRRVNSSESML 258
+++Y ++ + +VNS E+++
Sbjct: 86 DIDYHHNMLASHLKVNSKETIV 107
Score = 62.1 bits (144), Expect = 3e-10
Identities = 29/82 (35%), Positives = 46/82 (56%)
Frame = +3
Query: 255 VGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYVCVPLGVPNGKQG 434
VGW++TG V SS+IH++Y+RE P+H+T+DT G ++A+V L + + +
Sbjct: 107 VGWYSTGAGVNGGSSLIHDFYAREVPNPIHLTVDTGFTNGEGTIKAFVSSNLSLGDRQLV 166
Query: 435 CMFTPVDVTLTCYEPEIVGLQV 500
F + V L + E VG V
Sbjct: 167 AHFQEIPVDLRMVDAERVGFDV 188
>At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26s proteasome regulatory subunit s12
(proteasome subunit p40) (mov34 protein) SP:P26516 from
[Mus musculus]; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 308
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
Frame = +1
Query: 22 VKVHPVVLFQIVDAYERRNADSH-RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE--- 189
V VHP+VL IVD Y R DS RV+G LLG+S +GVV+VTN + VP +E
Sbjct: 17 VVVHPLVLLSIVDHYNRVAKDSSKRVVGVLLGSSSRGVVDVTNSYAVPFEEDDKDPSIWF 76
Query: 190 AELNYAMDVYELNRRVNSSESML 258
+ NY ++ + +R+N+ E ++
Sbjct: 77 LDHNYHESMFHMFKRINAKEHVV 99
Score = 32.3 bits (70), Expect = 0.28
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +3
Query: 255 VGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYVCVPLGVPNGKQG 434
VGW++TG ++ + +H ++ PV V +D + +AY V N Q
Sbjct: 99 VGWYSTGPKLRENDLDVHALFNGYVPNPVLVIIDVQPKELGIPTKAYYAVEEVKENATQK 158
Query: 435 C--MFTPVDVTLTCYEPEIVGLQ 497
+F V + +E E +G++
Sbjct: 159 SQKVFVHVSTEIAAHEVEEIGVE 181
>At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26S proteasome regulatory subunit S12
(MOV34) SP:P26516 from [Mus musculus]
Length = 310
Score = 61.7 bits (143), Expect = 4e-10
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Frame = +1
Query: 22 VKVHPVVLFQIVDAYERRNAD-SHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE--- 189
V VHP+VL IVD Y R D S RV+G LLG+S +G V+VTN + VP +E
Sbjct: 17 VIVHPLVLLSIVDHYNRVAKDTSKRVVGVLLGSSSRGTVDVTNSYAVPFEEDDKDTSIWF 76
Query: 190 AELNYAMDVYELNRRVNSSESML 258
+ NY ++ + +R+N+ E ++
Sbjct: 77 LDHNYHESMFHMFKRINAKEHIV 99
Score = 31.9 bits (69), Expect = 0.37
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +3
Query: 255 VGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYVCVPLGVPNGKQG 434
VGW++TG ++ + +H ++ PV V +D + +AY V N Q
Sbjct: 99 VGWYSTGPKLRENDLDVHALFNGYVPNPVLVIIDVQPKELGIPTKAYYAVEEVKENATQK 158
Query: 435 C--MFTPVDVTLTCYEPEIVGLQ 497
+F V + +E E +G++
Sbjct: 159 SQQVFVHVPTEIAAHEVEEIGVE 181
>At1g10840.1 68414.m01246 eukaryotic translation initiation factor 3
subunit 3 / eIF-3 gamma / eIF3h (TIF3H1) identical to
SP|Q9C5Z2 Eukaryotic translation initiation factor 3
subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 337
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +1
Query: 94 VIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAE-LNYAMDVYELNRRVN 240
V G LLG V+EVTNCF P ++ +++EA+ NY +++ R VN
Sbjct: 47 VTGQLLGLDVGSVLEVTNCFPFPVRDDDEEIEADGANYQLEMMRCLREVN 96
>At4g25070.1 68417.m03596 expressed protein ; expression supported
by MPSS
Length = 765
Score = 30.7 bits (66), Expect = 0.85
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 179 IKSKRNLITRWMFTS*TEESIPLKVCWLVGDWQ*SNQPLLC 301
IKS R +I R + + E + LK CWL W+ + Q +C
Sbjct: 515 IKSLRTMIHRTILSQEEMEEVVLKRCWLARYWELAVQHGIC 555
>At5g01240.2 68418.m00032 amino acid permease, putative strong
similarity to AUX1 GI:1531758 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 408
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -1
Query: 237 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVGYFH 133
D++V L+ IH+ I F F ++FVW +A+G H
Sbjct: 238 DTAVILMLIHQFITFGFACTPLYFVWE-KAIGMHH 271
>At5g01240.1 68418.m00031 amino acid permease, putative strong
similarity to AUX1 GI:1531758 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 488
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -1
Query: 237 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVGYFH 133
D++V L+ IH+ I F F ++FVW +A+G H
Sbjct: 318 DTAVILMLIHQFITFGFACTPLYFVWE-KAIGMHH 351
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +1
Query: 304 YTSIIPVNAVSLSMLL 351
YT+++PVNAVSLS LL
Sbjct: 231 YTTVVPVNAVSLSPLL 246
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +1
Query: 304 YTSIIPVNAVSLSMLL 351
YT+++PVNAVSLS LL
Sbjct: 231 YTTVVPVNAVSLSPLL 246
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +1
Query: 304 YTSIIPVNAVSLSMLL 351
YT+++PVNAVSLS LL
Sbjct: 231 YTTVVPVNAVSLSPLL 246
>At5g22940.1 68418.m02682 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 469
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 359 FAGWRSNGFTCI-CLCTIGSAKWKARL 436
FAG+RS + CLC +G A W RL
Sbjct: 332 FAGYRSEIVRSVFCLCPLGWAPWSPRL 358
>At5g67570.1 68418.m08520 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 611
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 295 PLLYTSIIPVNAVSLSMLLWTLRWLEVEWVYVHM 396
P+L ++ NA+ L+ + TL+W V WV+V +
Sbjct: 335 PVLEPDLVVYNAI-LNACVPTLQWKAVSWVFVEL 367
>At4g26430.1 68417.m03803 COP9 signalosome subunit 6 / CSN subunit 6
(CSN6B) identical to COP9 signalosome subunit 6
[Arabidopsis thaliana] GI:17940314, CSN complex subunit
6B [Arabidopsis thaliana] GI:18056667; contains Pfam
profile PF01398: Mov34/MPN/PAD-1 family; supporting cDNA
gi|17940313|gb|AF434762.1|AF434762; identical to cDNA
CSN complex subunit 6B (CSN6B) GI:18056666
Length = 317
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 255 VGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSL 365
+GW++TG++ T IH+ PV+V L+ ++
Sbjct: 110 LGWYSTGSDATESDMHIHKALMDINESPVYVLLNPAI 146
>At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM
domain-containing protein contains Pfam profiles
PF00168: C2 domain; contains PF02893: GRAM domain;
similar to Chain A, Crystal Structure Of Synaptotagmin
Iii C2aC2B Length(GI:6980525); similar to Synaptotagmin
III (SytIII) (Swiss-Prot:P40748) [Rattus norvegicus]
Length = 1859
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 331 RHSRE*YSCITEEWLVTSLPVAHQPTYFQRN 239
+ RE C++EE V LP AHQ F+ N
Sbjct: 763 KRERECVMCLSEEMSVIFLPCAHQVLCFKCN 793
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,611,980
Number of Sequences: 28952
Number of extensions: 303996
Number of successful extensions: 786
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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