Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0038
(508 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30) 68 5e-12
SB_34916| Best HMM Match : adh_short (HMM E-Value=4.8e-06) 31 0.55
SB_8022| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_9755| Best HMM Match : Sushi (HMM E-Value=0) 29 2.9
SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_44212| Best HMM Match : DUF1071 (HMM E-Value=5.9) 28 5.1
SB_50399| Best HMM Match : EPTP (HMM E-Value=0.041) 28 5.1
SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
>SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)
Length = 92
Score = 67.7 bits (158), Expect = 5e-12
Identities = 33/67 (49%), Positives = 42/67 (62%)
Frame = +3
Query: 216 LTCWSQDCHQDLRGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQG 395
L + D + GRK G PSHF S S+AR L+ LE +KLVEK GGR +T+QG
Sbjct: 22 LAPYDPDWYYIRAGRKNRGSAPSHFEVGSASVARSVLKGLEQIKLVEKASTGGRNITSQG 81
Query: 396 RRDLDRI 416
+RD+DRI
Sbjct: 82 QRDMDRI 88
Score = 58.8 bits (136), Expect = 2e-09
Identities = 21/32 (65%), Positives = 29/32 (90%)
Frame = +1
Query: 88 TGKVKVPEHMDLVKTARFKELAPYDPDWFYVR 183
+G +K+P+ +DLVKT +FKELAPYDPDW+Y+R
Sbjct: 2 SGNLKIPDWVDLVKTGKFKELAPYDPDWYYIR 33
>SB_34916| Best HMM Match : adh_short (HMM E-Value=4.8e-06)
Length = 251
Score = 31.1 bits (67), Expect = 0.55
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 4 HEGKMRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTAR-FKELAPYDPD 168
H G M + + + K+++ LKK G + V + VKT + FK+ AP P+
Sbjct: 165 HSGGMYASRASKCALNMVTKSLSVDLKKDGILAVAVNPGFVKTRKEFKDAAPLTPE 220
>SB_8022| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 386
Score = 29.9 bits (64), Expect = 1.3
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +1
Query: 28 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMD-LVKTARFKELAPYDPDWFYVRCAAILRH 204
TV V K KT ++VP ++ L T R E+ + W V+C
Sbjct: 221 TVNKVTGRKYTKTFVIMSGSNRPMRVPHSLEPLTLTNRVAEVT-FCRSWNAVKCTKYCAL 279
Query: 205 IYIRSPVGVKTVTKIFG 255
IY+ S + + V K+ G
Sbjct: 280 IYLHSRLDTQPVNKVIG 296
>SB_9755| Best HMM Match : Sushi (HMM E-Value=0)
Length = 1351
Score = 28.7 bits (61), Expect = 2.9
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 284 TFLQVIRQYCTQGFAIVGGIEAC*ESSGRWS 376
TF ++ C +GF ++G +S+G+WS
Sbjct: 21 TFPNTVKFMCDEGFNLIGSRNRTCQSNGKWS 51
>SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 455
Score = 28.7 bits (61), Expect = 2.9
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 284 TFLQVIRQYCTQGFAIVGGIEAC*ESSGRWS 376
TF ++ C +GF ++G +S+G+WS
Sbjct: 286 TFPNTVKFMCDEGFNLIGSRNRTCQSNGKWS 316
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 284 TFLQVIRQYCTQGFAIVGG-IEAC*ESSGRWS 376
TF + C +GF ++G + +C +SSG+WS
Sbjct: 112 TFPNKVTFSCDEGFILIGSPLRSC-QSSGKWS 142
>SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 39 C*TRQDC*NCRCSLKKNGQSQGT*AHGSCKDSSLQRAGSV 158
C QDC + RC +KNG + T A G CK S + ++
Sbjct: 301 CNCMQDCSSSRCFWRKNG-IECTPACGQCKGSDCTNSPAI 339
>SB_44212| Best HMM Match : DUF1071 (HMM E-Value=5.9)
Length = 274
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +1
Query: 205 IYIRSPVGVKTVTKIFGGANVMELHLHISAGHQAVLHARLCNRW 336
+Y+ + +G + K+FGG V L+ H + +A++H LC +W
Sbjct: 170 LYV-ADLGEISYGKLFGGV-VSRLYFHYAG--EALIHDTLCTKW 209
>SB_50399| Best HMM Match : EPTP (HMM E-Value=0.041)
Length = 204
Score = 27.9 bits (59), Expect = 5.1
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +1
Query: 448 RLSNKSLYFNFMLIKI*NLK 507
R+ NKS++FNF ++KI N +
Sbjct: 48 RVENKSIFFNFQVLKIANAR 67
>SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1048
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 284 TFLQVIRQYCTQGFAIVGGIEAC*ESSGRWSHSHHT 391
T+ I C +G+A++G +++G WS S+ T
Sbjct: 913 TYSSTINITCDEGYALIGPESRVCQANGTWSGSNVT 948
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,261,961
Number of Sequences: 59808
Number of extensions: 307182
Number of successful extensions: 740
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -