Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0037
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   109   6e-25
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    48   1e-06
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    45   1e-05
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   3.0  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    27   3.9  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.2  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   6.9  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   6.9  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    25   9.1  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    25   9.1  
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    25   9.1  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  109 bits (261), Expect = 6e-25
 Identities = 48/85 (56%), Positives = 65/85 (76%)
 Frame = +2

Query: 506 EKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVES 685
           +KA+LV+IA DVDPIELV+FLPALC+KMGVPY IVK K+RLG ++H+KT   LA+T V  
Sbjct: 146 KKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIHQKTAAVLAVTEVRE 205

Query: 686 GDRASFSKVVEAIKTNFNERYEELR 760
            D+   + +V A+  NF+ +Y+E R
Sbjct: 206 EDKNELASIVSAVDANFSAKYDESR 230



 Score = 71.3 bits (167), Expect = 1e-13
 Identities = 31/49 (63%), Positives = 38/49 (77%)
 Frame = +1

Query: 145 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRRRLYFSVV*KCP 291
           NPLF  RP++F IGQ IQP RDLSRFV+WP+YIR+QRRR   ++  K P
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVP 72



 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 32/87 (36%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
 Frame = +3

Query: 255 QKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET-XXXXXXXXXXXXXXXXXX 431
           ++ +L  RLKVPP I QF +TLDK TA  +FK+L KYRPET                   
Sbjct: 61  RRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGK 120

Query: 432 XXXXXXXRPNTIRSGTNTVTKLVEKKR 512
                  +P  ++ G N V  L+E K+
Sbjct: 121 SAQDVSKKPYNVKYGLNHVVALIEAKK 147


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
 Frame = +2

Query: 458 QHHPIRH-KHSHQAGREEKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGA 634
           Q H +R  K   +A R+ +  LV++A D+ P++++  +P LC    VPY     K  LG 
Sbjct: 51  QKHILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGE 110

Query: 635 LVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEEL 757
             + K  T   +  V  G +   SKV E     + E YEE+
Sbjct: 111 ASNTKRPTSCVMI-VPGGKKKDMSKVEE-----YKESYEEI 145


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
 Frame = +2

Query: 449 KEAQHHPIRHKHSHQAGREEK---AQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGK 619
           ++A H+    K +++A +      ++ +V+A D +PIE++L LP LC    VPY  V  K
Sbjct: 24  QQASHYKQLRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSK 83

Query: 620 SRLG 631
           + LG
Sbjct: 84  AALG 87


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -3

Query: 359  LQNLEKALSCSLVQCLGKLVDRRGHFQTTLKYSLL-RWMRIYLGHLTNLDK 210
            L+N ++ L  +L + L  +V++  H  TTL Y+L    + IY   + + DK
Sbjct: 1690 LKNSKQELLAALRKLLSTMVEQNDHTCTTLIYTLFEHLLNIYKETINDSDK 1740


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 464 HPIRHKHSHQAGREEKAQLVVIAHDV 541
           HP RH    +A  EEK Q++  A++V
Sbjct: 36  HPDRHTADQKAAAEEKFQIIQHAYEV 61


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 230 GPSISASSAEGCTSASSESAPSD 298
           GPS+S++S     S+SS S PS+
Sbjct: 355 GPSLSSASQPSAASSSSSSEPSN 377


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 258 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 359
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 486  LCLCRIGWC 460
            LCLC IGWC
Sbjct: 2326 LCLCYIGWC 2334


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 482  HSHQAGREEKAQLVVIAHDVDPIE 553
            H +   ++E  Q VVI HD++P E
Sbjct: 1069 HGYNPEKKELLQEVVIDHDLEPFE 1092


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -3

Query: 440 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 270
           L F   L  +S  Q  FP  FS     L+NL   +  ++ Q L    + R    +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = -3

Query: 689 HQTPHLLELSMCMSCGVQVHRGGTCP*QCSMV-HPFYGIT 573
           H   HL  +S C+    ++H G   P    +  HP YG T
Sbjct: 803 HMPVHLGSMSTCVRTQAKIHEGKLKPGDVLVTNHPSYGGT 842


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,833,627
Number of Sequences: 5004
Number of extensions: 54692
Number of successful extensions: 175
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)