Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0037
         (772 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)       126   2e-29
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)             126   2e-29
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)        48   1e-05
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)          36   0.048
SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35)         31   1.0  
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.4  
SB_6211| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.2  
SB_54844| Best HMM Match : Microvir_J (HMM E-Value=1.7)                29   5.5  
SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)               29   5.5  
SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74)           28   7.3  
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)           28   7.3  
SB_57776| Best HMM Match : EB (HMM E-Value=2.9)                        28   9.6  
SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)             28   9.6  
SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score =  126 bits (304), Expect = 2e-29
 Identities = 54/85 (63%), Positives = 72/85 (84%)
 Frame = +2

Query: 506 EKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVES 685
           +KAQLVVIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +VH+K  T L +T V  
Sbjct: 59  KKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVRQ 118

Query: 686 GDRASFSKVVEAIKTNFNERYEELR 760
            D+ S + ++E++KTN+NER++E+R
Sbjct: 119 EDKNSLNNLIESVKTNYNERFDEIR 143



 Score = 34.7 bits (76), Expect = 0.084
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +3

Query: 342 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKKR 512
           LFK+L KYRPET                         +P  ++ G N +T LVE K+
Sbjct: 4   LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKK 60


>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score =  126 bits (304), Expect = 2e-29
 Identities = 54/85 (63%), Positives = 72/85 (84%)
 Frame = +2

Query: 506 EKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVES 685
           +KAQLVVIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +VH+K  T L +T V  
Sbjct: 150 KKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVRQ 209

Query: 686 GDRASFSKVVEAIKTNFNERYEELR 760
            D+ S + ++E++KTN+NER++E+R
Sbjct: 210 EDKNSLNNLIESVKTNYNERFDEIR 234



 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 35/86 (40%), Positives = 46/86 (53%)
 Frame = +3

Query: 255 QKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXX 434
           QK++L +RLKVPP INQFTQ LD+ +   LFK+L KYRPET                   
Sbjct: 66  QKSLLYQRLKVPPAINQFTQALDRQSTVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGK 125

Query: 435 XXXXXXRPNTIRSGTNTVTKLVEKKR 512
                 +P  ++ G N +T LVE K+
Sbjct: 126 EEAPGKKPMLVKYGINHITSLVENKK 151



 Score = 68.9 bits (161), Expect = 4e-12
 Identities = 27/39 (69%), Positives = 34/39 (87%)
 Frame = +1

Query: 145 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRRR 261
           NPL EKRP+NF IG  IQP RDLSRFVRWP+Y+++QR++
Sbjct: 29  NPLIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQK 67


>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
          Length = 187

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
 Frame = +2

Query: 512 AQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVES 685
           A+ +V+A D +P+E++L LP LC    VPY  V+ K+ LG    V R    C    N  S
Sbjct: 110 AEFIVMAADTEPLEILLHLPLLCEDKNVPYVFVRSKAALGRATGVTRPVIACAVTVNEGS 169

Query: 686 GDRASFSKVVEAIK 727
             +     +  AI+
Sbjct: 170 QLKPQIQTLQNAIE 183


>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
          Length = 544

 Score = 35.5 bits (78), Expect = 0.048
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +2

Query: 491 QAGREEKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGK 619
           +A R+ +   V++A DV PI+++  +P +C    +PY  V  K
Sbjct: 108 KALRKGEKGFVILAGDVSPIDVISHIPVMCEDSKIPYAYVPSK 150


>SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35)
          Length = 1898

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 16/62 (25%), Positives = 34/62 (54%)
 Frame = +2

Query: 572  ALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYE 751
            A C++    + +++GK +  AL+ +KT   L +  V    R S + VV+   ++ +E+Y 
Sbjct: 1206 ASCKRCRDEFTVIRGKEK--ALLGKKTAEQLKVLGVGPETRESVNAVVKGSDSDIHEQYS 1263

Query: 752  EL 757
            ++
Sbjct: 1264 DI 1265


>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 239 ISASSAEGCTSASSESAPSDQPIYPDTG 322
           I+A      T+ASSE+APS  P  PD G
Sbjct: 34  IAARMGSASTAASSEAAPSSAPSMPDYG 61


>SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1957

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = +2

Query: 608  VKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEEL 757
            VKGK+ LG    +KT   L +  V    R S S VVEA  ++  E+Y ++
Sbjct: 1092 VKGKALLG----KKTAEQLKVLRVGPETRESVSAVVEASDSDIREQYSDI 1137


>SB_6211| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 490

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +2

Query: 599 YCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEEL 757
           + +++GK +  AL+ +KT   L +  V      S S VVEA  ++  E+Y ++
Sbjct: 338 FTVIRGKGK--ALLGKKTAEQLKVLRVGPETGESVSAVVEASDSDIREQYSDI 388


>SB_54844| Best HMM Match : Microvir_J (HMM E-Value=1.7)
          Length = 189

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -2

Query: 765 VLRSSS*RSLKFVLMASTTFEKEARSPDST 676
           ++RS S RSL   L  ST+ EKEA+  D+T
Sbjct: 119 IIRSGSSRSLPECLRISTSKEKEAKDIDNT 148


>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
          Length = 427

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +2

Query: 449 KEAQHHPIRHKHSHQAGR---EEKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGK 619
           K A  H    +  H+A +   + +A L +++++ D    V  + ALC + G+P   V   
Sbjct: 30  KTALIHDGLSRGLHEAAKSLDKREAHLCILSNNCDEAMYVKLVEALCAEHGIPLLKVDDS 89

Query: 620 SRLG 631
            +LG
Sbjct: 90  KKLG 93


>SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74)
          Length = 437

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 708 FEKEARSPDSTFVRAKHVHVLRCTSAPRRDLPLT 607
           F     + +S   R +H H+ RCTSAP    P T
Sbjct: 61  FNNFTNTTESWPQRKRHFHLRRCTSAPEPSSPNT 94


>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
          Length = 212

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 455 PLWWRLIFLGNLSFSSFPQPLFPG 384
           P WW ++F+G + FS     L+PG
Sbjct: 56  PKWWFMLFIGTIVFSIGYLVLYPG 79


>SB_57776| Best HMM Match : EB (HMM E-Value=2.9)
          Length = 669

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 138 DRESSLREEAKELCYWSGH 194
           DR  ++ E  KE+CYW GH
Sbjct: 187 DRRKNMEERHKEMCYW-GH 204


>SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)
          Length = 781

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +1

Query: 457 PTPSDPAQTQSPSWSRRKGAACGHRS*C*SY*AGSLPASVMP*NGCTILHCQGQVP 624
           P  SDP  +++P+ S  +   CGH+  C     G +P++V+   G  I +    +P
Sbjct: 599 PLGSDPYLSKTPTSSINRCKCCGHKEKC-----GDVPSNVL--TGKAIYYDMNNIP 647


>SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 138 DRESSLREEAKELCYWSGH 194
           DR  ++ E  KE+CYW GH
Sbjct: 137 DRRKNMEERHKEMCYW-GH 154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,211,079
Number of Sequences: 59808
Number of extensions: 444659
Number of successful extensions: 1372
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1372
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)