Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0037
(772 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 108 5e-24
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 108 5e-24
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 67 1e-11
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 67 1e-11
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 46 4e-05
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 40 0.001
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 36 0.032
Z50795-1|CAA90662.1| 502|Caenorhabditis elegans Hypothetical pr... 31 1.2
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep... 29 2.8
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 8.5
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 108 bits (259), Expect = 5e-24
Identities = 47/84 (55%), Positives = 66/84 (78%)
Frame = +2
Query: 509 KAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESG 688
+AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT +AL +V
Sbjct: 152 RAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPE 211
Query: 689 DRASFSKVVEAIKTNFNERYEELR 760
D+++ +K+VE + NF+ER+EE+R
Sbjct: 212 DKSALNKLVETVNNNFSERHEEIR 235
Score = 79.0 bits (186), Expect = 3e-15
Identities = 38/86 (44%), Positives = 49/86 (56%)
Frame = +3
Query: 255 QKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXX 434
Q A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 67 QSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGK 126
Query: 435 XXXXXXRPNTIRSGTNTVTKLVEKKR 512
RPNT+R G NT+T+LVE +R
Sbjct: 127 KEEVTKRPNTVRHGVNTITRLVETRR 152
Score = 67.3 bits (157), Expect = 1e-11
Identities = 27/38 (71%), Positives = 34/38 (89%)
Frame = +1
Query: 145 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRR 258
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QR+
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQ 67
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 108 bits (259), Expect = 5e-24
Identities = 47/84 (55%), Positives = 66/84 (78%)
Frame = +2
Query: 509 KAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESG 688
+AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT +AL +V
Sbjct: 132 RAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPE 191
Query: 689 DRASFSKVVEAIKTNFNERYEELR 760
D+++ +K+VE + NF+ER+EE+R
Sbjct: 192 DKSALNKLVETVNNNFSERHEEIR 215
Score = 67.3 bits (157), Expect = 1e-11
Identities = 27/38 (71%), Positives = 34/38 (89%)
Frame = +1
Query: 145 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRR 258
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QR+
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQ 67
Score = 67.3 bits (157), Expect = 1e-11
Identities = 38/86 (44%), Positives = 49/86 (56%)
Frame = +3
Query: 255 QKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXX 434
Q A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 67 QSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPES------------------- 107
Query: 435 XXXXXXRPNTIRSGTNTVTKLVEKKR 512
RPNT+R G NT+T+LVE +R
Sbjct: 108 -TEVTKRPNTVRHGVNTITRLVETRR 132
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 67.3 bits (157), Expect = 1e-11
Identities = 27/38 (71%), Positives = 34/38 (89%)
Frame = +1
Query: 145 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRR 258
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QR+
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQ 170
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = +3
Query: 255 QKAVLQRRLKVPPPINQFTQTLD 323
Q A+LQ+RLKVPP INQF LD
Sbjct: 170 QSAILQKRLKVPPTINQFRTALD 192
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 67.3 bits (157), Expect = 1e-11
Identities = 27/38 (71%), Positives = 34/38 (89%)
Frame = +1
Query: 145 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRR 258
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QR+
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQ 170
Score = 58.0 bits (134), Expect = 7e-09
Identities = 25/41 (60%), Positives = 32/41 (78%)
Frame = +3
Query: 255 QKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 377
Q A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 170 QSAILQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPES 210
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +2
Query: 512 AQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVES 685
++++V+A D +P+E++L LP LC VPY V+ K+ LG V R N S
Sbjct: 51 SEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACGVTRPVIAASITQNEGS 110
Query: 686 GDRASFSKVVEAIK 727
++ K+ E ++
Sbjct: 111 QLKSQIQKIKEDVE 124
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/76 (23%), Positives = 38/76 (50%)
Frame = +2
Query: 500 REEKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNV 679
R EK + ++A +V PI++ +P +C + +PY + + +LG V + + L
Sbjct: 82 RNEKG-ICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAVGHRRPSILIFVKP 140
Query: 680 ESGDRASFSKVVEAIK 727
+ + +V EA++
Sbjct: 141 SGDFKELYDEVAEALR 156
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 35.9 bits (79), Expect = 0.032
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = -3
Query: 419 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 300
SF SFP QP+ C +++P F+ N+EKA + C ++Q G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>Z50795-1|CAA90662.1| 502|Caenorhabditis elegans Hypothetical
protein R166.1 protein.
Length = 502
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/82 (23%), Positives = 38/82 (46%)
Frame = -2
Query: 741 SLKFVLMASTTFEKEARSPDSTFVRAKHVHVLRCTSAPRRDLPLTMQYGTPILRHNAGRK 562
SL+F+ S+ EK + +P + L + +PL ++ TP+L A +
Sbjct: 121 SLRFLSQLSSVAEKVS-TPSEAADTSSSSPSLNLNTTSSNSVPLAFKFSTPLLESLASDQ 179
Query: 561 RTSSIGSTS*AMTTSCAFSSRP 496
++SS S + ++ + +S P
Sbjct: 180 QSSSTSSVRSVLPSTSSNTSHP 201
>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
protein.
Length = 5071
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 229 WPKYIRIQRRRLYFSVV*KCPLRSTNLPRHWTRLQLRAFSRFW 357
W K + +QR+R+ S++ L T L R L AFSR W
Sbjct: 3722 WKKVLTLQRKRMAISLITASHLYKTELHR-GINFFLPAFSRLW 3763
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 292 LRSTNLPRHWTRLQLRA 342
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,131,225
Number of Sequences: 27780
Number of extensions: 328811
Number of successful extensions: 968
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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