Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0037
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   1.0  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   2.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.5  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   9.6  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 472 PAQTQSPSWSRRKGAACG 525
           P  T  P+W++ K  ACG
Sbjct: 107 PKLTPYPNWAQNKAGACG 124


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 337 LAVVLSSVWVNWLIGGGTFRRR*STAFCAGCG 242
           +AV+L+ V++     G    R+ +T++C GCG
Sbjct: 9   IAVLLAIVFLFDKCSGYPSIRQGTTSYCLGCG 40


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 443 STKEAQHHPIRHKHSH 490
           ST    HH + H HSH
Sbjct: 410 STPGPHHHTMGHGHSH 425


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 607 NAVWYTHFTA*RWQEENQLNRINIMSDD 524
           +AV YTH+       +N L  I+ + DD
Sbjct: 166 SAVRYTHYIGTLATNDNILESISYVKDD 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,449
Number of Sequences: 438
Number of extensions: 3959
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)