Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0037
(772 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 140 9e-34
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 136 2e-32
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 48 9e-06
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45... 44 1e-04
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45... 44 1e-04
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45... 44 1e-04
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45... 43 2e-04
At5g07010.1 68418.m00794 sulfotransferase family protein similar... 30 1.5
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 29 4.5
At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transfera... 29 4.5
At5g58340.1 68418.m07305 expressed protein ; expression supporte... 28 5.9
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 140 bits (339), Expect = 9e-34
Identities = 63/86 (73%), Positives = 76/86 (88%)
Frame = +2
Query: 503 EEKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 682
+ KAQLVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+KT +CL LT V+
Sbjct: 140 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTASCLCLTTVK 199
Query: 683 SGDRASFSKVVEAIKTNFNERYEELR 760
+ D+ FSK++EAIK NFN++YEE R
Sbjct: 200 NEDKLEFSKILEAIKANFNDKYEEYR 225
Score = 63.7 bits (148), Expect = 1e-10
Identities = 34/86 (39%), Positives = 46/86 (53%)
Frame = +3
Query: 255 QKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXX 434
QK +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 58 QKRILKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPE-DKAAKKERLVKKAQAEAEG 116
Query: 435 XXXXXXRPNTIRSGTNTVTKLVEKKR 512
+P ++ G N VT L+E+ +
Sbjct: 117 KPSESKKPIVVKYGLNHVTYLIEQNK 142
Score = 61.3 bits (142), Expect = 7e-10
Identities = 23/39 (58%), Positives = 32/39 (82%)
Frame = +1
Query: 145 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRRR 261
NPLFE+RPK F IG + P +DLSR+++WPK IR+QR++
Sbjct: 21 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQK 59
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 136 bits (329), Expect = 2e-32
Identities = 62/86 (72%), Positives = 74/86 (86%)
Frame = +2
Query: 503 EEKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 682
+ KAQLVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+KT L LT V+
Sbjct: 139 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTAAALCLTTVK 198
Query: 683 SGDRASFSKVVEAIKTNFNERYEELR 760
+ D+ FSK++EAIK NFN++YEE R
Sbjct: 199 NEDKLEFSKILEAIKANFNDKYEEYR 224
Score = 64.1 bits (149), Expect = 1e-10
Identities = 35/86 (40%), Positives = 46/86 (53%)
Frame = +3
Query: 255 QKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXX 434
QK +L++RLKVPP +NQFT+TLDK A LFKIL KYRPE
Sbjct: 57 QKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPE-DKAAKKERLLNKAQAEAEG 115
Query: 435 XXXXXXRPNTIRSGTNTVTKLVEKKR 512
+P ++ G N VT L+E+ +
Sbjct: 116 KPAESKKPIVVKYGLNHVTYLIEQNK 141
Score = 61.3 bits (142), Expect = 7e-10
Identities = 23/39 (58%), Positives = 32/39 (82%)
Frame = +1
Query: 145 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRRR 261
NPLFE+RPK F IG + P +DLSR+++WPK IR+QR++
Sbjct: 20 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQK 58
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 47.6 bits (108), Expect = 9e-06
Identities = 24/87 (27%), Positives = 44/87 (50%)
Frame = +2
Query: 500 REEKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNV 679
R + L VIA ++ PI+++ LP LC + GVPY V K L K TC L +
Sbjct: 63 RRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLVML 122
Query: 680 ESGDRASFSKVVEAIKTNFNERYEELR 760
+ ++ + +KT++ + ++++
Sbjct: 123 KPAKGDLTAEELAKLKTDYEQVSDDIK 149
>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 160
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +2
Query: 512 AQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVES 685
++ VV+A D +P+E++L LP L VPY V K LG V R C +N S
Sbjct: 83 SEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEAS 142
Query: 686 GDRASFSKVVEAIK 727
++ + +AI+
Sbjct: 143 QLKSQIQHLKDAIE 156
>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +2
Query: 512 AQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVES 685
++ VV+A D +P+E++L LP L VPY V K LG V R C +N S
Sbjct: 51 SEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEAS 110
Query: 686 GDRASFSKVVEAIK 727
++ + +AI+
Sbjct: 111 QLKSQIQHLKDAIE 124
>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +2
Query: 512 AQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVES 685
++ VV+A D +P+E++L LP L VPY V K LG V R C +N S
Sbjct: 51 SEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEAS 110
Query: 686 GDRASFSKVVEAIK 727
++ + +AI+
Sbjct: 111 QLKSQIQHLKDAIE 124
>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +2
Query: 512 AQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVES 685
++ +V+A D +P+E++L LP L VPY V K LG V R C +N S
Sbjct: 51 SEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACDVTRPVIACSVTSNEAS 110
Query: 686 GDRASFSKVVEAIK 727
++ + +AI+
Sbjct: 111 QLKSQIQHLKDAIE 124
>At5g07010.1 68418.m00794 sulfotransferase family protein similar to
steroid sulfotransferase 3 [Brassica napus] GI:3420008,
steroid sulfotransferase 1 [Brassica napus] GI:3420004;
contains Pfam profile PF00685: Sulfotransferase domain
Length = 359
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 515 APFLLDQLGDCVCAGSDGVGPLWWRLI 435
+P LLDQ D C G G GP W ++
Sbjct: 212 SPVLLDQAFDLYCRGVIGFGPFWEHML 238
>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
family protein (MSS2) similar to SMC-related protein MSS2
[Arabidopsis thaliana] GI:9965743; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1053
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -3
Query: 470 SDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCL 312
+ G+ P+ R +F + +S QP P CF L P L LE + +CS++ +
Sbjct: 971 NQGMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021
>At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transferase
family protein glucuronosyl transferase homolog,
Lycopersicon esculentum, PIR:S39507 ;contains Pfam
profile: PF00201 UDP-glucoronosyl and UDP-glucosyl
transferase
Length = 460
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +1
Query: 607 CQGQVPPRCTCTPQDMHMLSSNKCGVW*PRLLLEGRGSHQDELQRALRGAPQHWG 771
C+G VP CT D H+ + VW +LLE + E+++ LR G
Sbjct: 362 CEG-VPMICTSCFTDQHVNARYIVDVWRVGMLLERSKMEKKEIEKVLRSVMMEKG 415
>At5g58340.1 68418.m07305 expressed protein ; expression supported
by MPSS
Length = 466
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 428 QER*ASTKEAQHHPIRHKHSHQAGREEKAQLVVIAHDVDP 547
+E S ++ +H P K A RE K LV I +DP
Sbjct: 272 EEHTVSAQDQEHEPSLDKGDEMAARELKEYLVEIQGHIDP 311
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,433,446
Number of Sequences: 28952
Number of extensions: 314226
Number of successful extensions: 969
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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