Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0035
         (712 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    25   0.61 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      25   0.61 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      25   0.61 
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    24   1.1  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    24   1.4  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    24   1.4  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           24   1.4  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    23   2.5  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   9.9  

>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +2

Query: 86  IHGTHGAVNFICDQPEIKAVSFVGGDAAGKHIYTRASAAGK 208
           +HG     N     P++K +  +GG  AG  I     A+ K
Sbjct: 80  LHGLENVANLKSVNPDLKVLISIGGWNAGNAILNGIVASSK 120


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 424 PGTDVGPVISVAAKDRILRLVESG 495
           PGTD+   I+++ K + +R +E+G
Sbjct: 622 PGTDIRQSIALSRKKKCIRYMEAG 645


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 424 PGTDVGPVISVAAKDRILRLVESG 495
           PGTD+   I+++ K + +R +E+G
Sbjct: 514 PGTDIRQSIALSRKKKCIRYMEAG 537


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +2

Query: 53  EAGAPPGVVNIIHGTHGAVNFICDQPEIKA-VSFVGGDAAGKHIYTR 190
           + GAPP  +N+  GT+G    + D           GG  AG   YTR
Sbjct: 249 DEGAPPSKINLGLGTYGRGFALADPTNTSLYAGTYGGSDAGP--YTR 293


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 610 HSMLGVTSVMIVGPTKLPFSNPG 542
           H ML  T  M +GP+  P ++PG
Sbjct: 369 HDMLPETMHMGMGPSLTPLASPG 391


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 530 ATVESQFTPSFTPDSTSLKILSLAATEMTGPT 435
           A+  S ++PS +P+  S++ LSL       PT
Sbjct: 210 ASSASNYSPSQSPEPESVRPLSLVVRRCEEPT 241


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 610 HSMLGVTSVMIVGPTKLPFSNPG 542
           H ML  T  M +GP+  P ++PG
Sbjct: 369 HDMLPETMHMGMGPSLTPLASPG 391


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 128 PEIKAVSFVGGDAAGKHIYTRASA-AGKR 211
           P +KA+  +GG AAG   +T  +A A KR
Sbjct: 91  PALKALFSLGGYAAGTATFTAVAADATKR 119


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -2

Query: 162 SPPTKDTALISGWSHMKFTAPCVP*MILTTPGGAPAS 52
           SPP    +  +  S    T+P       TT  G+PAS
Sbjct: 10  SPPPAPQSAATPISSSGMTSPAAAPPPATTSSGSPAS 46


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,371
Number of Sequences: 336
Number of extensions: 2921
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)