Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0035
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    25   0.93 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.2  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    23   2.9  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    23   2.9  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   3.8  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   5.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   5.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   6.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.6  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   6.6  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 91  RDTRCGELHMRPAGDQ 138
           R+TRCG  H + AG+Q
Sbjct: 415 RNTRCGRYHNQNAGNQ 430


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 465 LGGYRDDGPHVGAGHV 418
           +GGYR   P  G GH+
Sbjct: 107 MGGYRSASPSPGMGHM 122


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 4/24 (16%)
 Frame = +1

Query: 340 AVFVGSAKEWIP----DLVKREQA 399
           A+FV +A +W+P    DLV  ++A
Sbjct: 20  AIFVNAAPDWVPPEVFDLVAEDKA 43


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 4/24 (16%)
 Frame = +1

Query: 340 AVFVGSAKEWIP----DLVKREQA 399
           A+FV +A +W+P    DLV  ++A
Sbjct: 20  AIFVNAAPDWVPPEVFDLVAEDKA 43


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/48 (22%), Positives = 23/48 (47%)
 Frame = -3

Query: 683 HLNRFVEGLNEQTDENRPEYFLFVTLHARRHVGDDSGPDEIAFLESGY 540
           ++++ +  + +Q  E +   F F        + DD GP+   F+E+ Y
Sbjct: 241 NISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSY 288


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +1

Query: 466 DRILRLVESGVKEGVNWLSTV 528
           DR+ R +  G++ G++WL  +
Sbjct: 680 DRLSRDLYCGIRAGLSWLERI 700


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +1

Query: 466 DRILRLVESGVKEGVNWLSTV 528
           DR+ R +  G++ G++WL  +
Sbjct: 718 DRLSRDLYCGIRAGLSWLERI 738


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 567 VGPTIITDVTPSMECY 614
           +GP    D+T SM+CY
Sbjct: 41  MGPISEVDMTYSMDCY 56


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 529 RPSRANLRLPLHLT 488
           + +R+NL LP HLT
Sbjct: 254 KEARSNLYLPFHLT 267


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 529 RPSRANLRLPLHLT 488
           + +R+NL LP HLT
Sbjct: 249 KEARSNLYLPFHLT 262


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,577
Number of Sequences: 438
Number of extensions: 3776
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)