Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0032
(522 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0263 + 2136858-2137331 110 8e-25
12_01_0323 - 2459854-2460306 109 1e-24
11_01_0317 - 2365493-2365786,2365825-2365953 84 6e-17
10_08_0260 - 16290798-16290893,16292284-16292570,16293248-162939... 29 2.3
08_01_0391 + 3443989-3444219 29 2.3
01_05_0050 + 17579872-17580103,17580206-17580262,17581178-175814... 29 2.3
12_02_0996 - 25115643-25115708,25115869-25116107,25116484-251165... 28 5.2
>01_01_0263 + 2136858-2137331
Length = 157
Score = 110 bits (264), Expect = 8e-25
Identities = 54/74 (72%), Positives = 64/74 (86%)
Frame = +1
Query: 34 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 213
MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV+S+PIRKDDEVQVVRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSSELRHKYNVRSIPIRKDDEVQVVRG 60
Query: 214 HYKGQQVGKVMQVY 255
YKG++ GKV+QVY
Sbjct: 61 SYKGRE-GKVVQVY 73
Score = 85.0 bits (201), Expect = 3e-17
Identities = 39/63 (61%), Positives = 52/63 (82%)
Frame = +3
Query: 255 RKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDK 434
R+++V+++ERI REK NG+T VGIHPSK V+ KLK++KDRKAILDR+A+GR A K K
Sbjct: 74 RRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKARGR--AADKAK 131
Query: 435 GKY 443
GK+
Sbjct: 132 GKF 134
>12_01_0323 - 2459854-2460306
Length = 150
Score = 109 bits (263), Expect = 1e-24
Identities = 54/74 (72%), Positives = 64/74 (86%)
Frame = +1
Query: 34 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 213
MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV+S+PIRKDDEVQVVRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVRSIPIRKDDEVQVVRG 60
Query: 214 HYKGQQVGKVMQVY 255
YKG++ GKV+QVY
Sbjct: 61 SYKGRE-GKVVQVY 73
Score = 84.2 bits (199), Expect = 6e-17
Identities = 39/63 (61%), Positives = 51/63 (80%)
Frame = +3
Query: 255 RKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDK 434
R+++V+++ERI REK NG+T VGIHPSK V+ KLK++KDRKAILDR+A GR A K K
Sbjct: 74 RRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKASGR--AADKAK 131
Query: 435 GKY 443
GK+
Sbjct: 132 GKF 134
>11_01_0317 - 2365493-2365786,2365825-2365953
Length = 140
Score = 84.2 bits (199), Expect = 6e-17
Identities = 39/63 (61%), Positives = 51/63 (80%)
Frame = +3
Query: 255 RKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDK 434
R+++V+++ERI REK NG+T VGIHPSK V+ KLK++KDRKAILDR+A GR A K K
Sbjct: 61 RRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKASGR--AADKAK 118
Query: 435 GKY 443
GK+
Sbjct: 119 GKF 121
Score = 72.5 bits (170), Expect = 2e-13
Identities = 43/74 (58%), Positives = 51/74 (68%)
Frame = +1
Query: 34 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 213
MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+N VVRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYN-------------VVRG 47
Query: 214 HYKGQQVGKVMQVY 255
YKG++ GKV+QVY
Sbjct: 48 SYKGRE-GKVVQVY 60
>10_08_0260 -
16290798-16290893,16292284-16292570,16293248-16293901,
16294999-16295546,16295900-16295961,16296062-16296481
Length = 688
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +3
Query: 207 TWTLQRPTGWQSDAGVRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKA 383
+W L PT + + RK ++ IE+ R+ Y GI P + KL + +K+
Sbjct: 513 SWALNFPTSCLTPSHRRKCALIEIEKNMRQAGKSLKEYAGIEPPN--MAKLNQTEHQKS 569
>08_01_0391 + 3443989-3444219
Length = 76
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 332 VNADICCCTIGLFSLNPLNVYNKLFTYTCITLPTCWPL 219
++AD+CCC+ L + V L + C+ L TC+ L
Sbjct: 41 MDADLCCCSCALIGI-AATVAASLLAFKCL-LTTCYKL 76
>01_05_0050 +
17579872-17580103,17580206-17580262,17581178-17581413,
17581509-17581637,17581752-17581811,17582088-17582158,
17582568-17582673,17582753-17582791
Length = 309
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +1
Query: 1 RHEVVLAKSDRMKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPL-SKELRQKFNVKSMP 177
RH +A + +++ +K+ + +R+NR+R + +H+ + PL S + ++K K
Sbjct: 209 RHARTVALAQQVQKSKKDSGRQRQNRRRKKRSQNHVEK--KQKPLTSDKKKRKIEKKKSR 266
Query: 178 IRKDDEVQVVRGHYKGQ 228
+DD GH +G+
Sbjct: 267 FERDD----TGGHNQGR 279
>12_02_0996 -
25115643-25115708,25115869-25116107,25116484-25116577,
25116726-25116864,25116960-25117081,25117261-25117491,
25117583-25117644,25118335-25118461,25118890-25119183,
25119266-25119622
Length = 576
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/65 (24%), Positives = 27/65 (41%)
Frame = +2
Query: 272 IH*EDSKRKGQWCNSICRHSPFKVCDCQVEDE*RPQSNPRSQSKGQTGCTWQRQG*IHRG 451
+H S+ +G C H+ K C C + E + Q+ R + Q ++ I R
Sbjct: 463 LHENLSQVEGHDIALCCNHNYMKQCKCSIAQEPQLQARARQNAASQQSQLHEKGRQIDRS 522
Query: 452 NCHSH 466
HS+
Sbjct: 523 AVHSN 527
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,545,646
Number of Sequences: 37544
Number of extensions: 288336
Number of successful extensions: 766
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -